PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G153800.10.p | ||||||||
Common Name | GLYMA_10G153800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 1116aa MW: 125399 Da PI: 9.3387 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.7 | 3.6e-10 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE e++++a +++G++ Wk++a+ + +R+ +++ Glyma.10G153800.10.p 46 QWSKEELERFYEAYRKYGKD-WKKVAAVVR-NRSTEMV 81 6*****************99.*********.**98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.05E-10 | 41 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.392 | 42 | 95 | IPR017884 | SANT domain |
SMART | SM00717 | 6.1E-5 | 43 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-5 | 46 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.5E-9 | 46 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-6 | 47 | 81 | No hit | No description |
SMART | SM01135 | 2.8E-55 | 626 | 727 | IPR033471 | DIRP domain |
Pfam | PF06584 | 2.4E-32 | 626 | 726 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1116 aa Download sequence Send to blast |
MAPTRKSRSV NKRMSSSNDN SPEKDGVNSN KSKQRKRKLT DKLGSQWSKE ELERFYEAYR 60 KYGKDWKKVA AVVRNRSTEM VEALYSMNRA YLSLPEGTAS VVGLIAMMTD HYNVMEGSDS 120 ERESNDAPGS RKPVKRKREK VQLSISKDQS HSIASSDDCL SILKKRRFDG IQLKPHAVGK 180 RTPRVPVYKK DDTENYVSPY RRSLKSTIDA NDDEVAHVVA LALTEAAQRG GSPQVSQTPS 240 RRVEQKSSPI QSWERKHQMS KTARAKFPDV SVDKEVLEGS IESRGAENEE YAKDNSSLMD 300 TEGIDTAEVF QKEGQFYRKR ERVKNVGNHQ LDDGGEACSG TEEGLSFNSL KEKVDIEVTN 360 EKLEKFSPKS HRKRNKKLFF GDETPALNAL QTLADLSLMM PISTMESESS IQLKGERMVA 420 DKNNRSALPE ATSTSHKRHK LKYSVVPKIE VLTSKESKTG KEPTKDTNAL SESKEKLPFA 480 DTAWKRKRKS MGSKVASAKL DSYPSGPLKD EALDDGNKPV VKGKHTDQAF TLPKQLKTVK 540 SSESSLCSDQ KDLTVSTAEI PLLNEVSLPT KQRKRKMILQ RTSLPKEKSS DYILKSQSNK 600 YSTLKEKLSS CLSSNMVRRW FVFEWFYSAI DYPWFAKREF MEYLNHVGLG NIPRLTRVEW 660 SVIKSSLGKP RRFSEHFLCE ERQKLEQYRE SVRKHYTELR TGIRDGLPTD LAKPLYVGQH 720 VIALHPKTRE IHDGSVLTVD YDKCRIQFDR PELGVEFVMD IDCMPLNSSD NMPEALRRHI 780 GSPISSFMNK EPQISGNSNF GGCEMNHSSP VKAKVATVDN LCAQAGCAQP CKVTHHQAKE 840 ADIQAVSELK HALDKKETLL MELRSANSDI LENKNGIDCL KDSEVFKKHY ATVSDAMLQL 900 RQRNTYRGNS LPSWMKPQAS FNVHDDLPSM LDSSLTQELG STVVQVIKGS RLRAHAMVDA 960 AFQALSLAKE GEDAFIKIGQ ALDSINHQQL ASQSRLPVIR SQEQVNANGS FYHLNHSTSG 1020 VSEPILNDPS LPKPHNCSDK FDTELPSDLI TSCVATLIMI QTCTERQYPP ADVAQILDSA 1080 VTSLHPCCSQ NLPIYREIQM CMGRIKTQML ALIPT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 571 | 576 | QRKRKM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19336 | 0.0 | cotyledon| epicotyl| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G153800.10.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235362 | 1e-158 | AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006589139.1 | 0.0 | protein ALWAYS EARLY 2 isoform X3 | ||||
Refseq | XP_006589140.1 | 0.0 | protein ALWAYS EARLY 2 isoform X4 | ||||
Refseq | XP_006589141.1 | 0.0 | protein ALWAYS EARLY 2 isoform X4 | ||||
Refseq | XP_006589142.1 | 0.0 | protein ALWAYS EARLY 2 isoform X4 | ||||
Refseq | XP_006589143.1 | 0.0 | protein ALWAYS EARLY 2 isoform X4 | ||||
TrEMBL | K7LJK9 | 0.0 | K7LJK9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G29481.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G153800.10.p |