PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G142600.2.p

Common Name

GLYMA_10G142600, Glyma10g28290.3, LOC100820151

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 692aa MW: 74150.7 Da PI: 6.889

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G142600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50	5.2e-16	465	511	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Glyma.10G142600.2.p 465 VHNLSERKRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 511 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.89E-17	457	515	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.3E-20	458	519	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.22E-20	458	521	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.216	461	510	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-13	465	511	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-17	467	516	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MPLYELYRLA REKLGKETTS TRAPDQCSSP ENDFFELVWE NGQISSQGQS SRVRRSPSCK 60 SLPSHCLPSH SPKARDKDVG YGSYTRLGKF GDLDSGLNEI PMSVPSSEVD FCQDEDVLPW 120 LDYPSIDGSL QQEYGSDFLP ASNSFTLLDK KSNGNMAFRD SQKTSEEQGN VFKGSSAGQV 180 ETARPKASST SQLFPPSLHQ CQTSFVSSRS RASDITENNN TSNANQDASY GKITHILSSS 240 SDFSNAKVQK CDPPMNSNGS SSTIMNFSHF ARPAAMVRAN LHSIGLKSGL SSSRSDSMEM 300 KNKGAAATSS NPPESILVDS SVECLKEPII QCQQVVEQSK ADVNSLLPKS VEQNAVPSKQ 360 SEPAGKESAA KIDLIPNQVP GDNGTKGQTA AEKSKEPAVA SSSVCSGNGT DQGSEEPNQN 420 LKRKRKDTDD SECHSEDVEE ESAGAKKTAG GRGGAGSKRS RAAEVHNLSE RKRRDRINEK 480 MRALQELIPN CNKVDKASML DEAIEYLKTL QLQVQIMSMG AGLYMPPMML PAGMQHMHAP 540 HMAPFSPMGV GMHMGYGMGY GMGMPDMNGG SSRFPMIQVP QMQGTHIPVA HMSGSTAFHG 600 MARANPPGFG LPGQGHPMPM PRAPMFPFSG GQMPNVDPQV KQSTGGRDST SQMPTQCEAA 660 AVGFEQSTLA HNNGHATKAN DNGSVNPGPG R*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MPLYELYRLA REKLGKETTS TRAPDQCSSP ENDFFELVWE NGQISSQGQS SRVRRSPSCK  60
SLPSHCLPSH SPKARDKDVG YGSYTRLGKF GDLDSGLNEI PMSVPSSEVD FCQDEDVLPW  120
LDYPSIDGSL QQEYGSDFLP ASNSFTLLDK KSNGNMAFRD SQKTSEEQGN VFKGSSAGQV  180
ETARPKASST SQLFPPSLHQ CQTSFVSSRS RASDITENNN TSNANQDASY GKITHILSSS  240
SDFSNAKVQK CDPPMNSNGS SSTIMNFSHF ARPAAMVRAN LHSIGLKSGL SSSRSDSMEM  300
KNKGAAATSS NPPESILVDS SVECLKEPII QCQQVVEQSK ADVNSLLPKS VEQNAVPSKQ  360
SEPAGKESAA KIDLIPNQVP GDNGTKGQTA AEKSKEPAVA SSSVCSGNGT DQGSEEPNQN  420
LKRKRKDTDD SECHSEDVEE ESAGAKKTAG GRGGAGSKRS RAAEVHNLSE RKRRDRINEK  480
MRALQELIPN CNKVDKASML DEAIEYLKTL QLQVQIMSMG AGLYMPPMML PAGMQHMHAP  540
HMAPFSPMGV GMHMGYGMGY GMGMPDMNGG SSRFPMIQVP QMQGTHIPVA HMSGSTAFHG  600
MARANPPGFG LPGQGHPMPM PRAPMFPFSG GQMPNVDPQV KQSTGGRDST SQMPTQCEAA  660
AVGFEQSTLA HNNGHATKAN DNGSVNPGPG R*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	469	474	ERKRRD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.18033	0.0	cotyledon\| epicotyl\| hypocotyl\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G142600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031131	0.0	KT031131.1 Glycine max clone HN_WYQ_57 bHLH transcription factor (Glyma10g28290.3) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006589101.1	0.0	transcription factor PIF3
Refseq	XP_014618650.1	0.0	transcription factor PIF3
TrEMBL	I1LAY5	0.0	I1LAY5_SOYBN; BHLH transcription factor
STRING	GLYMA10G28290.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-47	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Glyma.10G142600.2.p
Entrez Gene	100820151

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]