PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.10G138300.4.p | ||||||||
Common Name | GLYMA_10G138300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 482aa MW: 52642.1 Da PI: 6.7453 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.3 | 4.1e-30 | 256 | 314 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt+a gCpv+k+v+r+ +d++v+++tYeg+Hnh+ Glyma.10G138300.4.p 256 SDGCQWRKYGQKIAKGNPCPRAYYRCTMAvGCPVRKQVQRCMDDKTVLITTYEGNHNHP 314 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-32 | 240 | 316 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 248 | 316 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.964 | 250 | 316 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-35 | 255 | 315 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-26 | 257 | 314 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 482 aa Download sequence Send to blast |
MENHHQMQQP NREFTILRST DFLRQNLNLY PTTVNTGEHA DPSIKEVDFF SSRSPTKNSD 60 TDNSSPEEPH DHRHTNMAKD DGSPTLFNDQ LVNTALNLSP SAGLSRSAAN DENIETLLTT 120 LQRESLRLKE ENCKLRTMLD QITKNYNQLQ LFIALQKQKQ CQMETNLNGM MFGQHLLDPR 180 GPFTKLDAQV APFPDDKSGQ RGHPETDPVE DVLEQSTSQS WGSSKSPKFE ESNSSELPLK 240 KTRVSVRARS EAPLISDGCQ WRKYGQKIAK GNPCPRAYYR CTMAVGCPVR KQVQRCMDDK 300 TVLITTYEGN HNHPLPPSAI VMANSTSAAA SMFLSSSCST SNNNEALSNT VGVFSSMPYI 360 PMATLSTSAP FPTITLDMTT NPSALTSPLP LHATTFPQLL GHPVIFPHKM PHPLLGQQQP 420 LFTTETMSAA IASNPNFTIA LAAAISSIIG APRGNDGINN NSSNGGSDLP LNGTSMLPGS 480 T* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-21 | 246 | 316 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-21 | 246 | 316 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.36771 | 0.0 | cotyledon |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.10G138300.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU019552 | 0.0 | EU019552.1 Glycine max WRKY1 (WRKY1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025979885.1 | 0.0 | probable WRKY transcription factor 47 isoform X4 | ||||
TrEMBL | K7LJA4 | 0.0 | K7LJA4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G27860.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G04450.1 | 4e-74 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.10G138300.4.p |