PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G138300.1.p
Common NameGLYMA_10G138300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 484aa    MW: 52898.4 Da    PI: 6.8755
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G138300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.1e-30258316259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK  kg+++pr+YYrCt+a gCpv+k+v+r+ +d++v+++tYeg+Hnh+
  Glyma.10G138300.1.p 258 SDGCQWRKYGQKIAKGNPCPRAYYRCTMAvGCPVRKQVQRCMDDKTVLITTYEGNHNHP 316
                          7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-32242318IPR003657WRKY domain
SuperFamilySSF1182901.57E-27250318IPR003657WRKY domain
PROSITE profilePS5081129.964252318IPR003657WRKY domain
SMARTSM007742.4E-35257317IPR003657WRKY domain
PfamPF031061.7E-26259316IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MENHHQMQQP NREFTILRST DFLRQNLNLY PTTVNTGEHA DPSIKEVDFF SSRSPTKNSD  60
TDNSSPEEPH DHRHTNMAKD DGSPTLFNDQ LVNTALNLSP SAGLSRSAAN DENIETLLTT  120
LQRESLRLKE ENCKLRTMLD QITKNYNQLQ LFIALQKQKQ CQKMETNLNG MMFGQHLLDP  180
RGPFTKLDAQ VAPFPDDKSG QRQGHPETDP VEDVLEQSTS QSWGSSKSPK FEESNSSELP  240
LKKTRVSVRA RSEAPLISDG CQWRKYGQKI AKGNPCPRAY YRCTMAVGCP VRKQVQRCMD  300
DKTVLITTYE GNHNHPLPPS AIVMANSTSA AASMFLSSSC STSNNNEALS NTVGVFSSMP  360
YIPMATLSTS APFPTITLDM TTNPSALTSP LPLHATTFPQ LLGHPVIFPH KMPHPLLGQQ  420
QPLFTTETMS AAIASNPNFT IALAAAISSI IGAPRGNDGI NNNSSNGGSD LPLNGTSMLP  480
GST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-21248318877Probable WRKY transcription factor 4
2lex_A1e-21248318877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.367710.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G138300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195520.0EU019552.1 Glycine max WRKY1 (WRKY1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014618646.10.0probable WRKY transcription factor 47 isoform X1
TrEMBLA0A0R0I1870.0A0A0R0I187_SOYBN; Uncharacterized protein
STRINGGLYMA10G27860.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-76WRKY family protein