PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G132200.1.p
Common NameGLYMA_10G132200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 321aa    MW: 37214.2 Da    PI: 9.3939
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G132200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.9e-1977124148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g+WT+eEd llv++v+++G g+W+++ar  g++R +k+c++rw +yl
  Glyma.10G132200.1.p  77 KGPWTAEEDRLLVEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 124
                          79********************************************97 PP
2Myb_DNA-binding52.31.3e-16130174147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  Glyma.10G132200.1.p 130 RGQITPQEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 174
                          7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.49872124IPR017930Myb domain
SMARTSM007176.5E-1776126IPR001005SANT/Myb domain
SuperFamilySSF466895.08E-3076171IPR009057Homeodomain-like
PfamPF002491.1E-1777124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2478131IPR009057Homeodomain-like
CDDcd001672.83E-1279124No hitNo description
PROSITE profilePS5129424.928125179IPR017930Myb domain
SMARTSM007175.8E-15129177IPR001005SANT/Myb domain
PfamPF002492.0E-14130174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-24132178IPR009057Homeodomain-like
CDDcd001672.21E-10134175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MIIDHKTTPV TLDDVQGMIA LIFKDHTILK MTKISVPEIG RKYFIQAQNL KPYSMYWGEV  60
MAGHVGRGVL EEEVWRKGPW TAEEDRLLVE YVRLHGEGRW NSVARLAGLK RNGKSCRLRW  120
VNYLRPDLKR GQITPQEESI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKKAK  180
SPSDAAEKAR NRLMRKQQFH QQQQQQQEQL QQQHQAQQQQ MQFNFDMKGI MAMLEDNIHR  240
TPYISQSRQE MINMHQNTTE EQGYLYSMLN DNSSASSAPE TSAEEVLWDG LWNIDDVHGN  300
FSVASAASKV GLYNLVAPFC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-275917910128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G132200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0967530.0BT096753.1 Soybean clone JCVI-FLGm-15B2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535980.10.0transcription factor MYB2 isoform X1
TrEMBLA0A0R0HSY10.0A0A0R0HSY1_SOYBN; Uncharacterized protein
STRINGGLYMA10G26681.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-82myb domain protein 305