PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G126900.1.p | ||||||||
Common Name | GLYMA_10G126900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 257aa MW: 28288.6 Da PI: 8.1639 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.5 | 5.1e-20 | 186 | 220 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ kTp+WR gp+g+ktLCnaCG+++++ +l Glyma.10G126900.1.p 186 CQHCGAEKTPQWRAGPSGPKTLCNACGVRFKSGRL 220 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.519 | 180 | 216 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.3E-18 | 180 | 230 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.33E-14 | 182 | 243 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-15 | 184 | 218 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.54E-14 | 185 | 232 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 186 | 211 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.8E-17 | 186 | 220 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MCKHDFLSLS RMETIGSVDD LLDFSSDIGE EDDYDDKPRK ACPSLNSKCA GPSLFNPLVQ 60 VDPNHSFSEF AEEELEWLSN KDAFPSVETF VDLSSIQPGT TKNQKSAPVL ECSTGSSNSN 120 NSTNSISLLN SCDHLKVPVR ARSKSRSRHR PGLAENSSQQ VWWRQPSNGT SKADEGMKIS 180 SIGRKCQHCG AEKTPQWRAG PSGPKTLCNA CGVRFKSGRL VPEYRPASSP TFHSDLHSNS 240 HRKIVEMRRQ KQMGMG* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G126900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097287 | 0.0 | BT097287.1 Soybean clone JCVI-FLGm-16E7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025979745.1 | 0.0 | GATA transcription factor 1-like isoform X1 | ||||
Swissprot | Q8LAU9 | 3e-49 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A0R0I1E4 | 0.0 | A0A0R0I1E4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G25480.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8537 | 29 | 41 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 4e-49 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G126900.1.p |