PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G118900.1.p
Common NameGLYMA_10G118900, LOC100816416
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 282aa    MW: 31413 Da    PI: 9.515
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G118900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.2e-21125175255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAaka+++a+ k++g
  Glyma.10G118900.1.p 125 HYRGVRRRP-WGKYAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDKAAFKMRG 175
                          8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.2E-33124184IPR001471AP2/ERF domain
CDDcd000187.27E-32124183No hitNo description
PfamPF008471.1E-14125175IPR001471AP2/ERF domain
PROSITE profilePS5103224.434125183IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-23125185IPR016177DNA-binding domain
SMARTSM003808.3E-38125189IPR001471AP2/ERF domain
PRINTSPR003671.3E-13126137IPR001471AP2/ERF domain
PRINTSPR003671.3E-13165185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MQSSISQSDI FITDYLVPQE VPFQFQFQDM SKNDNNMPMN HTNNNLQMPQ ITSFSKPPRS  60
SSNLSNRKPS LKNITIPSIT SGLATAMSQT TATTTTIATT MYNNNQVSSS SFSSDETNNT  120
KDDKHYRGVR RRPWGKYAAE IRDPNRKGSR VWLGTFDTAI EAAKAYDKAA FKMRGSKAIL  180
NFPLEIGSDQ SKEESSSSSS SVSSSSIVIK VGVKREREEE SERKNNYEKS EFNNNSNSNK  240
HVKKEECPLT PSCWKGFWDT DVMGTIFSVP PLSPLSPLMV V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-32124186163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-31124190470ATERF1
3gcc_A1e-31124190470ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.556560.0cotyledon| flower| hypocotyl| leaf| meristem| seed coat| somatic embryo| stem| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G118900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0948060.0BT094806.1 Soybean clone JCVI-FLGm-6O21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535939.10.0ethylene-responsive transcription factor ERF105
RefseqXP_028185081.10.0ethylene-responsive transcription factor ERF105-like
TrEMBLA0A0B2REI90.0A0A0B2REI9_GLYSO; Ethylene-responsive transcription factor ERF105
TrEMBLA0A0R4J4940.0A0A0R4J494_SOYBN; Uncharacterized protein
STRINGGLYMA10G23440.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.16e-31ERF family protein