PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G101000.1.p | ||||||||
Common Name | GLYMA_10G101000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARR-B | ||||||||
Protein Properties | Length: 286aa MW: 32856 Da PI: 8.5869 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 67.3 | 2.5e-21 | 172 | 227 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLG.GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+W eLH++F+ +v+ LG se A Pk+il+lm+ +gLt+e+v+SHLQkY++ Glyma.10G101000.1.p 172 KPRLVWDVELHRKFLVVVNDLGiDSEFAFPKRILDLMNGEGLTRENVASHLQKYKI 227 79*******************733567***************************86 PP | |||||||
2 | Response_reg | 70 | 1e-23 | 3 | 111 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 v+ vdD++ + +l++++ k +y +v+++ ++ +ale+l+++ +Dl+ D++mp+mdGl+ll+ ++ lp+i+++a++++e + + Glyma.10G101000.1.p 3 VVAVDDDQMCLTVLENLIHKCHY-NVTTTNQAIKALEMLRKNInkFDLLTSDVNMPDMDGLKLLELVGL-QMGLPVIMLSAYNNKERVMR 90 5679*******************.***************887667*******************98844.458***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga ++l+Kp+ +eel + Glyma.10G101000.1.p 91 GVIQGACEYLTKPVRIEELQN 111 ******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 3.2E-37 | 1 | 160 | No hit | No description |
SuperFamily | SSF52172 | 5.55E-31 | 1 | 124 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.6E-25 | 1 | 113 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 38.623 | 2 | 117 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.7E-21 | 3 | 111 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.17E-24 | 6 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-21 | 169 | 227 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.15E-13 | 170 | 228 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.3E-19 | 172 | 226 | IPR006447 | Myb domain, plants |
SuperFamily | SSF52540 | 1.93E-7 | 248 | 278 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00225 | 4.0E-8 | 252 | 276 | IPR001752 | Kinesin motor domain |
Gene3D | G3DSA:3.40.850.10 | 4.2E-8 | 252 | 276 | IPR001752 | Kinesin motor domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007018 | Biological Process | microtubule-based movement | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003777 | Molecular Function | microtubule motor activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008017 | Molecular Function | microtubule binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MRVVAVDDDQ MCLTVLENLI HKCHYNVTTT NQAIKALEML RKNINKFDLL TSDVNMPDMD 60 GLKLLELVGL QMGLPVIMLS AYNNKERVMR GVIQGACEYL TKPVRIEELQ NIWQHVLRRR 120 IDSKDKNKIA SKGKKAAIWL NIKLGQKRKE QSEDEEEEEY HKENEEHSNQ KKPRLVWDVE 180 LHRKFLVVVN DLGIDSEFAF PKRILDLMNG EGLTRENVAS HLQKYKIGPR KPTWQPSMVA 240 TLGSSDPYLQ MDLLKGFHST IFAYGVTSSG KTHTMHYWVH LPSSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-18 | 168 | 231 | 1 | 62 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G101000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541468.1 | 1e-133 | two-component response regulator ARR12 | ||||
Refseq | XP_028188502.1 | 1e-133 | two-component response regulator ARR12-like | ||||
Swissprot | A2X1N2 | 4e-85 | ORR24_ORYSI; Two-component response regulator ORR24 | ||||
Swissprot | B8AEH1 | 8e-85 | ORR23_ORYSI; Two-component response regulator ORR23 | ||||
Swissprot | Q6H805 | 4e-85 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | A0A0R0HRH5 | 0.0 | A0A0R0HRH5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G22320.1 | 1e-133 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 4e-83 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G101000.1.p |
Publications ? help Back to Top | |||
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