PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G095100.1.p
Common NameGLYMA_10G095100, LOC100776343
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 387aa    MW: 43839.2 Da    PI: 6.3489
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G095100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011313335123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk F  + + ++H +++
  Glyma.10G095100.1.p 313 FMCRKCGKAFAVRGDWRTHEKNC 335
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.58229251IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.1E-6229248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64229256IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SuperFamilySSF576671.87E-6295333No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5309333IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549313333IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808313333IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MADPYSNFFS PLGSNFFHYP SPSPSSQHHH PYAHNFLNQN GSNIINNNHN TFFHFHNFQT  60
TICSSFSSSS SPPSPPLRVA LPLLTLSPKN EEEQEEDDDQ EQDQDHEILQ DNFCTAMDVE  120
ENYNNNRTLL HHLHPKEEEQ DQEDGPDETV TVALHIGLPS PSAAEIASVL SSACSTDQEQ  180
QQQQQQQDGN NNNNGSDDFS SSGFLSNRLN KGQYWIPTPS QILIGPTQFS CPVCCKTFNR  240
YNNMQMHMWG HGSQYRKGPE SLRGTQPTGM LRLPCYCCSP GCRNNIDHPR AKPLKDFRTL  300
QTHYKRKHGI KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF  360
GSGHAAYGID GFEEEEEPAS EVEQDR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.189900.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G095100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0988930.0BT098893.1 Soybean clone JCVI-FLGm-23O4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537201.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-140ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLI1L9X00.0I1L9X0_SOYBN; Uncharacterized protein
STRINGGLYMA10G12500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-124C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]