PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G087200.1.p
Common NameGLYMA_10G087200, LOC100813769
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 240aa    MW: 25678.7 Da    PI: 6.2572
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G087200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.97.9e-39451461101
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrr+C ++C++ap+f ++q ++kfa+vhk+FGasnv+kll++++ ++r++a++++ yeA+ar++dPvyG+v++il+lqqq+++
  Glyma.10G087200.1.p  45 PCGACKFLRRRCIEGCIFAPHFGNDQgAAKFAAVHKVFGASNVSKLLSNISVNRRNEAVTTISYEAQARLSDPVYGCVSTILALQQQVAT 134
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkeel 101
                          l+aela+l+++l
  Glyma.10G087200.1.p 135 LQAELAMLQTQL 146
                          *******99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.23544146IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-3945143IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAESQGEGGG DSGASGSRRR GIASRRAMAA QTQDEAMVES SPATPCGACK FLRRRCIEGC  60
IFAPHFGNDQ GAAKFAAVHK VFGASNVSKL LSNISVNRRN EAVTTISYEA QARLSDPVYG  120
CVSTILALQQ QVATLQAELA MLQTQLMNSR FAYASALQTT QLQQPNMNAG ALQPAYSNNS  180
CASTNLLNLS SFNNNTGFDL EMDTAPSSSS LEPLQLTRLP LCKEEDEEES KTQQAFNHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-374515211115LOB family transfactor Ramosa2.1
5ly0_B2e-374515211115LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G087200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-106AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537147.11e-177LOB domain-containing protein 20
RefseqXP_028182441.11e-177LOB domain-containing protein 20-like
SwissprotQ9SRV36e-68LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A445IJX81e-175A0A445IJX8_GLYSO; LOB domain-containing protein 20
TrEMBLK7LI561e-175K7LI56_SOYBN; Uncharacterized protein
STRINGGLYMA10G11031.11e-176(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-55LOB domain-containing protein 20