PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G086200.1.p
Common NameLOC102670371
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19850 Da    PI: 10.2159
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G086200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.36.2e-212168249
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +  n+sn  vtfskRr+g++KKA+EL +LC+++vavi+fs+ ++++ +
  Glyma.10G086200.1.p 21 KMRNESNLWVTFSKRRTGVFKKANELATLCGVDVAVIMFSPGNRVFSF 68
                         56799***************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.7E-291271IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.4221272IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-261390IPR002100Transcription factor, MADS-box
CDDcd002652.53E-311382No hitNo description
PRINTSPR004042.5E-171434IPR002100Transcription factor, MADS-box
PfamPF003192.4E-222268IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-173449IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-174970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MPDLNGVAKK TKGQQKIEMK KMRNESNLWV TFSKRRTGVF KKANELATLC GVDVAVIMFS  60
PGNRVFSFGS PSVDSVVQRY KTQGPPPLLT LDLNKVHSTV YEVELHTHLH CLSNQIAIEK  120
KRTKDLNHLA KAAEDQFWWA RPIESMTDSQ LDKYKKMLEE FKRQLKEKCG NLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A5e-151386174MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B5e-151386174MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C5e-151386174MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D5e-151386174MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A5e-151386174Myocyte-specific enhancer factor 2A
3kov_B5e-151386174Myocyte-specific enhancer factor 2A
3kov_I5e-151386174Myocyte-specific enhancer factor 2A
3kov_J5e-151386174Myocyte-specific enhancer factor 2A
3p57_A5e-151386174Myocyte-specific enhancer factor 2A
3p57_B5e-151386174Myocyte-specific enhancer factor 2A
3p57_C5e-151386174Myocyte-specific enhancer factor 2A
3p57_D5e-151386174Myocyte-specific enhancer factor 2A
3p57_I5e-151386174Myocyte-specific enhancer factor 2A
3p57_J5e-151386174Myocyte-specific enhancer factor 2A
6byy_A6e-151386275MEF2 CHIMERA
6byy_B6e-151386275MEF2 CHIMERA
6byy_C6e-151386275MEF2 CHIMERA
6byy_D6e-151386275MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G086200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358430.0AC235843.2 Glycine max clone GM_WBb0059O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589898.11e-129agamous-like MADS-box protein AGL62
RefseqXP_028184651.11e-129agamous-like MADS-box protein AGL62
TrEMBLA0A445IJW31e-127A0A445IJW3_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA10G10900.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13864521
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-42AGAMOUS-like 62