PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G083200.1.p
Common NameGLYMA_10G083200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 218aa    MW: 24684.2 Da    PI: 10.0321
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G083200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.94.1e-212674149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k+i+n++  q tfskRr+gi+KKA+EL +LCd++ avi+fs+ ++++ +
  Glyma.10G083200.1.p 26 KKISNERYLQATFSKRRTGIFKKASELATLCDVDLAVIVFSPGNRVFSF 74
                         689******************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.1651878IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-311877IPR002100Transcription factor, MADS-box
CDDcd002658.16E-341986No hitNo description
SuperFamilySSF554554.84E-2719100IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-192040IPR002100Transcription factor, MADS-box
PfamPF003192.4E-232774IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-194055IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-195576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDTKSVPSLN DGNVKKTKGR QKIEMKKISN ERYLQATFSK RRTGIFKKAS ELATLCDVDL  60
AVIVFSPGNR VFSFGSPHVD SVIQRYIAHA PTPPTLDLNE PFCTMDERGL HAHLDYLANR  120
FTREKKREED LNRLLEVSKN HFWWTSPIES MNKAQVENYK KALEDLKTLV NKKRGSSSSH  180
VNSAVPMQNP MGVIDGTILC YRQFNDIQRN GPTPGLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n6j_A5e-1719110192Myocyte-specific enhancer factor 2B
1n6j_B5e-1719110192Myocyte-specific enhancer factor 2B
1tqe_P4e-1719110293Myocyte-specific enhancer factor 2B
1tqe_Q4e-1719110293Myocyte-specific enhancer factor 2B
1tqe_R4e-1719110293Myocyte-specific enhancer factor 2B
1tqe_S4e-1719110293Myocyte-specific enhancer factor 2B
6c9l_A4e-1719110293Myocyte-specific enhancer factor 2B
6c9l_B4e-1719110293Myocyte-specific enhancer factor 2B
6c9l_C4e-1719110293Myocyte-specific enhancer factor 2B
6c9l_D4e-1719110293Myocyte-specific enhancer factor 2B
6c9l_E4e-1719110293Myocyte-specific enhancer factor 2B
6c9l_F4e-1719110293Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G083200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025979764.11e-164agamous-like MADS-box protein AGL62
RefseqXP_028182622.11e-164agamous-like MADS-box protein AGL62
SwissprotQ9FKK26e-43AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A0B2P9W11e-162A0A0B2P9W1_GLYSO; Agamous-like MADS-box protein AGL62
TrEMBLK7LI351e-162K7LI35_SOYBN; Uncharacterized protein
STRINGGLYMA10G10295.11e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3584922
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-45AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]