PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.10G077400.1.p | ||||||||
Common Name | GLYMA_10G077400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 137aa MW: 15780 Da PI: 9.9029 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 147.7 | 5.9e-46 | 11 | 136 | 1 | 125 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFh + eel+v+yL++kv+++++++ ++i+e+d+y+++Pw+Lp k+ +e+ewyfF++rd+ky++g r+nr ++sgyWkatg++ Glyma.10G077400.1.p 11 LPPGFRFHLSHEELIVHYLRNKVTSSPIPA-SFIAEIDLYNYNPWELPsFKTLFGEDEWYFFTPRDRKYPNGVRPNREATSGYWKATGTN 99 79****************************.89***************656667999********************9999********* PP NAM 90 kevlsk.kgelvglkktLvfykgrapkgektdWvmhe 125 k+++++ + + + +kk Lvfykgr +kg+kt+W+mhe Glyma.10G077400.1.p 100 KPIFTScGMKSITVKKALVFYKGRPSKGSKTNWIMHE 136 ****9977788*************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-49 | 8 | 136 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.006 | 11 | 136 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-22 | 12 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 137 aa Download sequence Send to blast |
MDKDANSVIQ LPPGFRFHLS HEELIVHYLR NKVTSSPIPA SFIAEIDLYN YNPWELPSFK 60 TLFGEDEWYF FTPRDRKYPN GVRPNREATS GYWKATGTNK PIFTSCGMKS ITVKKALVFY 120 KGRPSKGSKT NWIMHE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-52 | 2 | 136 | 6 | 137 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}. | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.10G077400.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC235460 | 4e-99 | AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014627676.1 | 2e-85 | NAC transcription factor 25 isoform X1 | ||||
Swissprot | D2SMN4 | 1e-61 | NAMB1_HORVS; NAC transcription factor NAM-B1 | ||||
Swissprot | Q8GY42 | 7e-62 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | K7LHZ3 | 1e-97 | K7LHZ3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G09246.1 | 2e-98 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G61110.1 | 3e-64 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.10G077400.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|