PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G077000.1.p | ||||||||
Common Name | GLYMA_10G077000, LOC100802373 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 129aa MW: 14785.9 Da PI: 9.8487 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.8 | 4.8e-41 | 11 | 128 | 1 | 120 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFh + eel+v+yL++kv++++l++ ++i+e+d+y+++Pw+Lp+ + +e+ewyfF++rd+ky++g r+nrat+sgyWk tg+dk Glyma.10G077000.1.p 11 LPPGFRFHLSYEELIVHYLRNKVTSSPLPA-SFIAEIDLYNYNPWELPTLF--GEDEWYFFTPRDRKYPNGVRPNRATTSGYWKPTGTDK 97 79****************************.89***************544..789********************************** PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektd 120 +++++ + + + +kk Lvfykgr pkg+ktd Glyma.10G077000.1.p 98 PIFTScGMKSITVKKALVFYKGRPPKGSKTD 128 ****977788*******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.41E-44 | 8 | 128 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.857 | 11 | 128 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-18 | 12 | 120 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MDKDANSKIQ LPPGFRFHLS YEELIVHYLR NKVTSSPLPA SFIAEIDLYN YNPWELPTLF 60 GEDEWYFFTP RDRKYPNGVR PNRATTSGYW KPTGTDKPIF TSCGMKSITV KKALVFYKGR 120 PPKGSKTD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-48 | 2 | 128 | 6 | 132 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G077000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235460 | 5e-89 | AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006589858.1 | 1e-91 | NAC transcription factor 25 | ||||
Swissprot | Q8GY42 | 2e-57 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | I1L9H4 | 3e-90 | I1L9H4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G09180.1 | 5e-91 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 7e-60 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G077000.1.p |
Entrez Gene | 100802373 |