PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G069700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 404aa MW: 43911.2 Da PI: 8.5113 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.2e-18 | 56 | 116 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ Glyma.10G069700.1.p 56 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRAQLqeygQVGDANVFYWFQNRKSRSKH 116 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 112.1 | 3e-36 | 55 | 117 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k Glyma.10G069700.1.p 55 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 117 689**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-7 | 39 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.511 | 52 | 117 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-12 | 52 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.8E-9 | 54 | 121 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.98E-9 | 55 | 117 | No hit | No description |
Pfam | PF00046 | 2.2E-15 | 56 | 116 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MASSNRHWPS MFKSKPCSPH HQWQHDINAS LISTSCHRSP YSSGGGGCEE RSPEPKPRWN 60 PKPEQIRILE AIFNSGMVNP PRDEIRKIRA QLQEYGQVGD ANVFYWFQNR KSRSKHKLRH 120 LQNSSSKNMN HHHHMNVDQQ NHTIPTNSSL PQTTTTAPSS SSSSSSEKSS PKELIIPTTK 180 VFSIGFSDAV PNSPTASVNQ TRINDIMLPP PPPVEAFFFP VQQQHDVHHG VTSSSQGFCF 240 SELSNVVHAQ QNNVGPCTSL LLSEIVGHGA ASAGASKKDK SQMKIMHQPS LLNFCVTTPT 300 TATTSTPTTT TTVVVPPITT TSTTVSSPLM PQLQGIGDPG GAARSTVFIN DVAFEVAVGP 360 FNVREAFGDD VVLIHASSGQ PVLTNQWGLT LHSLQHGACY YLI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.29290 | 0.0 | somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G069700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095716 | 0.0 | BT095716.1 Soybean clone JCVI-FLGm-25E14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001242805.2 | 0.0 | homeobox domain-containing protein | ||||
Refseq | XP_028184108.1 | 0.0 | WUSCHEL-related homeobox 9-like | ||||
TrEMBL | A0A0B2RIU3 | 0.0 | A0A0B2RIU3_GLYSO; WUSCHEL-related homeobox 9 | ||||
STRING | GLYMA10G08030.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3824 | 33 | 61 | Representative plant | OGRP6103 | 12 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 7e-65 | homeobox-3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G069700.1.p |