PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G059700.1.p
Common NameGLYMA_10G059700, LOC100785596
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 299aa    MW: 32975.8 Da    PI: 8.9112
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G059700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012118140123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C+++F++   L  H  +H
  Glyma.10G059700.1.p 118 YQCKTCNRCFPSFQALGGHRASH 140
                          9***********99999998887 PP
2zf-C2H213.70.00018204226123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs+   L  H+r+H
  Glyma.10G059700.1.p 204 HECSICGAEFSSGQALGGHMRRH 226
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.04E-8117140No hitNo description
PROSITE profilePS5015710.305118145IPR007087Zinc finger, C2H2
SMARTSM003550.08118140IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-10118142IPR007087Zinc finger, C2H2
PROSITE patternPS000280120140IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-8199226No hitNo description
Gene3DG3DSA:3.30.160.609.2E-4202226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.7E-13203227IPR007087Zinc finger, C2H2
SMARTSM003550.01204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743204226IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MQVQEELLVV SKDHTQMMMV KGKRTKRQRA PSPLRLAMPY NSTSSNSSTN NSIDSATTSS  60
PSPSPTNNTI EFREDQDMAN CLILLAQGRY HVAAPTPHHN NNNNDDDNLK KSTSLYLYQC  120
KTCNRCFPSF QALGGHRASH KKPKQNGTFS SEAVTNFIEE NNDRYDPTTS TTLSLKTPNG  180
VSNLCGTITA TTTTTTTTKA NKVHECSICG AEFSSGQALG GHMRRHRTLV NASMTTSMRG  240
GNVVGSNEFQ EAKKPLKLDL NLPALPEDDH HRESKFSFQQ REKNVIVFSK SSLVDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G059700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537011.10.0zinc finger protein ZAT5
TrEMBLK7LHP20.0K7LHP2_SOYBN; Uncharacterized protein
STRINGGLYMA10G06760.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-48C2H2 family protein