PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G059000.1.p | ||||||||
Common Name | GLYMA_10G059000, LOC100783472 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 27053 Da PI: 5.2159 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.2e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W +eEde+l v++lG ++W++ a+ g++R++k+c++rw +yl Glyma.10G059000.1.p 8 KGTWLQEEDEQLTSFVTRLGERRWDSLAKVAGLKRSGKSCRLRWMNYL 55 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.7e-18 | 62 | 106 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g ++ eE++l+v++ +qlG++ W++Iar+++ gRt++++k++w+++l Glyma.10G059000.1.p 62 GHFSVEEEQLIVQLQQQLGNK-WAKIARKLP-GRTDNEIKNFWRTHL 106 6799*****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.113 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.58E-27 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.47E-8 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.595 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 62 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 63 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.15E-6 | 81 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MQGEHLRKGT WLQEEDEQLT SFVTRLGERR WDSLAKVAGL KRSGKSCRLR WMNYLRPNLK 60 HGHFSVEEEQ LIVQLQQQLG NKWAKIARKL PGRTDNEIKN FWRTHLRNRA QAQQVPGDFK 120 YKLEIATEEV NQKSIDMDSK DYKHGNVCCQ DSEWETKDGS SIHTLPLSDW ELGSSPYETR 180 ILDWIAELQN GYGDKELEQD CNSTGTCNNY SPQEFDEGCD SWDYSGSLWD MN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-25 | 6 | 110 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-24 | 6 | 110 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-24 | 6 | 110 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 1e-24 | 6 | 110 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 6e-25 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 6e-25 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G059000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB029264 | 1e-44 | AB029264.1 Glycine max gene for GmMYB7, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014618278.1 | 1e-174 | transcription factor MYB27 | ||||
TrEMBL | I1L911 | 1e-173 | I1L911_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G06680.1 | 1e-173 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 2e-52 | myb domain protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G059000.1.p |
Entrez Gene | 100783472 |