PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G051500.1.p
Common NameGLYMA_10G051500, LOC100811274
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 533aa    MW: 57447.1 Da    PI: 9.7654
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G051500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-056587123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+k F r  nL+ H r H
  Glyma.10G051500.1.p 65 FICEICNKGFQRDQNLQLHRRGH 87
                         89*******************88 PP
2zf-C2H213.80.00017141163123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC++C+k +  +s+ k H +t+
  Glyma.10G051500.1.p 141 WKCEKCSKKYAVQSDWKAHTKTC 163
                          58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-56487IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.02E-76487No hitNo description
PfamPF121716.4E-56587IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8456587IPR007087Zinc finger, C2H2
SMARTSM003550.0226587IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM00355110106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-4129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.02E-7136161No hitNo description
SMARTSM00355130141161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MQMMPADPFS LSTSIGGFTQ DQQNTNPNPK PNAPPKKKRN LPGTPDPDAE VIALSPKTLM  60
ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLRQRSNKE VRKKVYICPE QTCVHHDPAR  120
ALGDLTGIKK HFSRKHGEKK WKCEKCSKKY AVQSDWKAHT KTCGTREYKC DCGTLFSRKD  180
SFITHRAFCD ALAEESARLT AVTTTTLNFK SEEGANNVMN SQQHGLGGHG LIGAQQSLQN  240
VSGIPKFGPH SFRLDFNGME QQQRPSLSLW LNQGNPQMNH NNNNINSSNS TSNVGPNYMS  300
ACSSSGLPEI VQMAQANAMM GSSSMVSNFG VHHAGSNNSS SANLSLGKRG EAGGSTVVDM  360
ASIYNNSEGQ NKNSKPASPM SATALLQKAA QMGSTRSTNP SIFSGSFGVI NSPSSQTTSL  420
NNNNNNGDAA MMLGSNTTTT TTVAANANDH FSSLTHSSNS FDQLVMQVNG QLQSEPVKLK  480
LHSNAVENNL TRDFLGVSGG GGGGGPQYLS QELAKFASIN SPMGLIQFTS NQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36137203369Zinc finger protein JACKDAW
5b3h_F1e-36137203369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
191103KLRQRSNKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.385260.0meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G051500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536984.10.0zinc finger protein JACKDAW
RefseqXP_006588776.10.0zinc finger protein JACKDAW
RefseqXP_014618477.10.0zinc finger protein JACKDAW
TrEMBLI1L8U20.0I1L8U2_SOYBN; Uncharacterized protein
STRINGGLYMA10G05880.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-102C2H2-like zinc finger protein