PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.10G045400.1.p | ||||||||
Common Name | GLYMA_10G045400, LOC100778467 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 20039.2 Da PI: 10.0455 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.00097 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Glyma.10G045400.1.p 47 FECKTCNRKFSSFQALGGHRASH 69 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Glyma.10G045400.1.p 91 HECSICGMEFSLGQALGGHMRKH 113 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.19 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.47E-9 | 47 | 113 | No hit | No description |
Pfam | PF13912 | 3.5E-11 | 47 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.305 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.5E-4 | 89 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.159 | 91 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.057 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.4E-9 | 91 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 180 aa Download sequence Send to blast |
MVAILKRQGE NESEETIIGL AKSLMQLSRV QQQSNKPLLK TFSPTEFECK TCNRKFSSFQ 60 ALGGHRASHK KPKFEAEELK EEAKKTKPKM HECSICGMEF SLGQALGGHM RKHRGAISEN 120 DNNNEALSSI KQAIAKAPVL KRSNSKRVMC LEMDLNLTPL ENDLKLLFGN KAPRVDLSL* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.4526 | 0.0 | flower| meristem |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.10G045400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT091677 | 1e-155 | BT091677.1 Soybean clone JCVI-FLGm-8F13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003537203.1 | 1e-129 | zinc finger protein ZAT11 | ||||
TrEMBL | I1L8M4 | 1e-127 | I1L8M4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G05210.1 | 1e-128 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53600.1 | 2e-38 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.10G045400.1.p |
Entrez Gene | 100778467 |