PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.10G042800.1.p

Common Name

GLYMA_10G042800, Glyma10g04890.2, LOC100792121

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 492aa MW: 54302.7 Da PI: 6.2338

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.10G042800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.6e-16	280	326	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Glyma.10G042800.1.p 280 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 326 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-20	274	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.936	276	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.57E-17	279	330	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.4E-21	280	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-13	280	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-18	282	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MDDDDEEYPI PVSKKPSTQN DEIMELLWQN GQVVMQNQNQ RPFRKQPPTT DGDGPIPARE 60 IRSSEAENYN SQHLFMQEDE MASWLHYPIH EDPPPFDHHD FCADILYPPP NATASQNQSS 120 ASVQSSVRTT ELQHPAPRPP IPPPRRQEHT LSRIHNFTHF AKHGNASSSS KAAAPAQPTV 180 ATAEHVETGR ASVSAAAGKT PASDGGRETA TCDVTVTSSP GGSSGSAEPV QREPVVNRKR 240 KGREQEESEY QSEDVDFESP EAKKQVRGST STKRSHAAEV HNLSERRRRD RINEKMKALQ 300 ELIPRCNKSD KASMLDEAIE YLKSLQLQVQ MMSMGCGMVP MIFPGIQQYM PPMGMGIGMG 360 MGMGMEMGMG MNRSVMPFPN MLASSTLPAA TATAHLGPRF PMPPFHMPHV ATPDSSRMQG 420 ANHPDNNMLN SLGTLDPDQS CIPNFTDPYQ QYLSLQQAQL QLMQTMNQPN VSKPSTSRGQ 480 ENPEKHQSDK T*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MDDDDEEYPI PVSKKPSTQN DEIMELLWQN GQVVMQNQNQ RPFRKQPPTT DGDGPIPARE  60
IRSSEAENYN SQHLFMQEDE MASWLHYPIH EDPPPFDHHD FCADILYPPP NATASQNQSS  120
ASVQSSVRTT ELQHPAPRPP IPPPRRQEHT LSRIHNFTHF AKHGNASSSS KAAAPAQPTV  180
ATAEHVETGR ASVSAAAGKT PASDGGRETA TCDVTVTSSP GGSSGSAEPV QREPVVNRKR  240
KGREQEESEY QSEDVDFESP EAKKQVRGST STKRSHAAEV HNLSERRRRD RINEKMKALQ  300
ELIPRCNKSD KASMLDEAIE YLKSLQLQVQ MMSMGCGMVP MIFPGIQQYM PPMGMGIGMG  360
MGMGMEMGMG MNRSVMPFPN MLASSTLPAA TATAHLGPRF PMPPFHMPHV ATPDSSRMQG  420
ANHPDNNMLN SLGTLDPDQS CIPNFTDPYQ QYLSLQQAQL QLMQTMNQPN VSKPSTSRGQ  480
ENPEKHQSDK T*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	284	289	ERRRRD

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.61879	0.0	leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.10G042800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031114	0.0	KT031114.1 Glycine max clone HN_CCL_148 bHLH transcription factor (Glyma10g04890.2) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003536955.1	0.0	transcription factor PIF1
Refseq	XP_006588716.1	0.0	transcription factor PIF1
TrEMBL	K7LHE4	0.0	K7LHE4_SOYBN; BHLH transcription factor
STRING	GLYMA10G04890.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4607	33	51
Representative plant	OGRP258	16	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	5e-40	phytochrome interacting factor 3-like 5

Link Out ? help Back to Top
Phytozome	Glyma.10G042800.1.p
Entrez Gene	100792121

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]