PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G037700.1.p
Common NameGLYMA_10G037700, LOC100783645
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 297aa    MW: 33840.9 Da    PI: 6.9134
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G037700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.53.2e-50101381129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF P+deelv +yL kk++++++    ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyWkatgkd+
  Glyma.10G037700.1.p  10 LPPGFRFYPSDEELVLHYLYKKITNEEVLK-GTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDR 98 
                          79************************9655.78***************88888999********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +v++  ++e+vg++ktLvfy++rap+g kt W+mhe+rle
  Glyma.10G037700.1.p  99 TVFDPaTREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138
                          ****978889***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-608156IPR003441NAC domain
PROSITE profilePS5100557.9110156IPR003441NAC domain
PfamPF023653.9E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGLRDIGASL PPGFRFYPSD EELVLHYLYK KITNEEVLKG TLMEIDLHTC EPWQLPEVAK  60
LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRTV FDPATREVVG MRKTLVFYRN  120
RAPNGIKTGW IMHEFRLETP HLPPKEDWVL CRVFHKGKAD NSAKLIMYES TVPSLTLASS  180
SPTNQNTTPS IGYNQFLAPF SSSMATHHHN HNHHIPNQSQ NNNNNSLMGL LQFSRETNTN  240
NSSTVTQISP KCDDNNGYGF LWDMDLEENS FNDGVASNLD GMRFFELDNN NSVVLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-47915616165NO APICAL MERISTEM PROTEIN
1ut4_B1e-47915616165NO APICAL MERISTEM PROTEIN
1ut7_A1e-47915616165NO APICAL MERISTEM PROTEIN
1ut7_B1e-47915616165NO APICAL MERISTEM PROTEIN
3swm_A1e-47915619168NAC domain-containing protein 19
3swm_B1e-47915619168NAC domain-containing protein 19
3swm_C1e-47915619168NAC domain-containing protein 19
3swm_D1e-47915619168NAC domain-containing protein 19
3swp_A1e-47915619168NAC domain-containing protein 19
3swp_B1e-47915619168NAC domain-containing protein 19
3swp_C1e-47915619168NAC domain-containing protein 19
3swp_D1e-47915619168NAC domain-containing protein 19
4dul_A1e-47915616165NAC domain-containing protein 19
4dul_B1e-47915616165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.587600.0cotyledon| epicotyl| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G037700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588681.10.0NAC domain-containing protein 21/22
RefseqXP_028183432.10.0NAC domain-containing protein 21/22-like
TrEMBLA0A0B2P9H40.0A0A0B2P9H4_GLYSO; NAC domain-containing protein 21/22
TrEMBLI1L8E70.0I1L8E7_SOYBN; Uncharacterized protein
STRINGGLYMA10G04350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43813359
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-93NAC domain containing protein 74