PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G037000.1.p | ||||||||
Common Name | GLYMA_10G037000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 26658.8 Da PI: 7.0541 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 8.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l++ ++ +G ++W++ ++ g+ R++k+c++rw +yl Glyma.10G037000.1.p 14 KGLWTQEEDLILIHHINTHGHKNWRALPKQAGLLRCGKSCRLRWINYL 61 678*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 43.4 | 8.1e-14 | 67 | 106 | 1 | 42 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 rg++T eE++ +++++ lG++ W++Ia++++ gRt++++k+ Glyma.10G037000.1.p 67 RGNFTREEEDMVIQLHETLGNR-WSAIAAKFP-GRTDNEIKN 106 89********************.*********.********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.048 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-29 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.35E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 65 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 12.998 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.0E-12 | 67 | 106 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.09E-9 | 69 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRAPCCEKM GLKKGLWTQE EDLILIHHIN THGHKNWRAL PKQAGLLRCG KSCRLRWINY 60 LKPDIKRGNF TREEEDMVIQ LHETLGNRWS AIAAKFPGRT DNEIKNQKLS SLDTLNSKQQ 120 PVNLPTEEKK PLSPPQCVSS SMSTLTTSSD TTTNEHNSNH HHVPMMNNST TAPESLDDDF 180 WSQVLSADNN NSDATTSFPA TGAAADGKFQ GVHPSSVYNN VDYWFDVYMG AQEFPKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-23 | 12 | 112 | 25 | 124 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G037000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014618427.2 | 1e-159 | LOW QUALITY PROTEIN: transcription factor MYB30 | ||||
Refseq | XP_028182497.1 | 1e-160 | transcription factor MYB30-like | ||||
TrEMBL | A0A0R0HNZ4 | 1e-179 | A0A0R0HNZ4_SOYBN; Uncharacterized protein | ||||
STRING | XP_007144899.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22366 | 4 | 4 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 9e-68 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G037000.1.p |