PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G032900.1.p
Common NameGLYMA_10G032900, Glyma10g03820.2, LOC100792310
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 393aa    MW: 44348.2 Da    PI: 10.0807
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G032900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993.1e-31326384360
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+k
  Glyma.10G032900.1.p 326 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 384
                          99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.8E-17277322IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.4E-33312384IPR003657WRKY domain
PROSITE profilePS5081129.998319385IPR003657WRKY domain
SuperFamilySSF1182906.15E-27322384IPR003657WRKY domain
SMARTSM007744.7E-38324384IPR003657WRKY domain
PfamPF031066.4E-27326383IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MSHMFVDKWG GLLVFWCSLV WFLFSSLFFI NFLEANMEEV EQANRVAVES CHRVLSLLSQ  60
PRDQVQHRNL MVETGETVVR FKKVVSMLHN GLGHARVRKL KNPQIPSSHQ SIFLDNPNCK  120
TLTNNSNNNH HSKKNLYFPQ TSYPDNSVQE HGSTIKNSLS LGQPSLELSS NGKSPLHLTQ  180
QGSSNHYHFF QQQQQQRLLQ QQQQQQQMKH QAEMLFRRNN SGINLNFDST SCTPTMSSTK  240
SFISSLSIDG SVANLDGSAF HLIGAPHSSD QNSQQPKRKC SARGDEGSLK CGSSARCHCS  300
KKRKHRVKRA IKVPAISNKL ADIPPDDYSW RKYGQKPIKG SPHPRGYYKC SSMRGCPARK  360
HVERCLEEPT MLIVTYEGEH NHPKLPTQSA NA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-20317386775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G032900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312370.0KT031237.1 Glycine max clone HN_CCL_17 WRKY transcription factor (Glyma10g03820.2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304641.10.0probable WRKY transcription factor 21
SwissprotO043361e-122WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLI1L8A80.0I1L8A8_SOYBN; WRKY transcription factor
STRINGGLYMA10G03820.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Representative plantOGRP18171541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-113WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]