PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G029600.4.p
Common NameGLYMA_10G029600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 342aa    MW: 39741.9 Da    PI: 5.8593
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G029600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.9e-35421332102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++++++d+ +++++sws++g+sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g++
  Glyma.10G029600.4.p  42 FLTKTFDVVDDPVTNHVVSWSRDGTSFVVWDPNTFSTSLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFIRGHR 122
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Glyma.10G029600.4.p 123 HLLRNIRRRKA 133
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3838131IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.21E-3538131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6038131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNYMYQVKEE YLESSPSSSY QLGGEFPAKP IEGLHDTGPP PFLTKTFDVV DDPVTNHVVS  60
WSRDGTSFVV WDPNTFSTSL LPRYFKHNNF SSFVRQLNTY GFRKIDPDKW EFANEGFIRG  120
HRHLLRNIRR RKAPSQLTQG HHCVEVGRFD LDKEIDRLRH DKLVLLMELV NLRKQQQKAR  180
MYIQEMEQRL QGTEIKQKQM MAFLARAIKN PTFIHQLLQK EKSKELEEAF TKKRRQIEQG  240
ARGFGESSSV KVEALEFGES ELEMLAREMQ GFGKGGIDRE VGPEALESQE RLDRVLDEEF  300
WEELLFSEKF EGRLDIPTAE DKDEDVIKVL ANQLDLLDSS H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-244013118120Heat shock factor protein 1
5d5u_B7e-244013127129Heat shock factor protein 1
5d5v_B7e-244013127129Heat shock factor protein 1
5d5v_D7e-244013127129Heat shock factor protein 1
5hdg_A6e-24401318110Heat shock factor protein 1
5hdn_A6e-24401318110Heat shock factor protein 1
5hdn_B6e-24401318110Heat shock factor protein 1
5hdn_C6e-24401318110Heat shock factor protein 1
5hdn_D6e-24401318110Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.302048e-53leaf| seed coat
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G029600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963080.0JN896308.1 Glycine max heat shock transcription factor HSFA6b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001276249.10.0heat stress transcription factor 21
SwissprotQ9LUH81e-106HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLK7LH360.0K7LH36_SOYBN; Uncharacterized protein
STRINGGLYMA10G03530.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-100heat shock transcription factor A6B