PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G020700.1.p
Common NameGLYMA_10G020700, LOC100805017
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 461aa    MW: 49393.6 Da    PI: 8.974
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G020700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-114975127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                         ++ ++C +++rtG C yG+rC+++H++
  Glyma.10G020700.1.p 49 PGVPNCVYYMRTGVCGYGSRCRYNHPR 75
                         5789*********************96 PP
2zf-CCCH40.64.2e-1396120327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C+++++tGtCk+G++CkF+H++
  Glyma.10G020700.1.p  96 EPPCQYYLKTGTCKFGASCKFHHPK 120
                          79*********************96 PP
3zf-CCCH37.15.2e-12141166227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C+++++tG+Ck+G +CkF+H++
  Glyma.10G020700.1.p 141 GEKECSYYLKTGQCKFGISCKFHHPQ 166
                          7899********************97 PP
4zf-CCCH352.3e-11297323127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +++++C++++rtG Ck+G  C+++H++
  Glyma.10G020700.1.p 297 PGEPECQYYLRTGDCKFGLACRYHHPR 323
                          5799*********************96 PP
5zf-CCCH34.53.5e-11342366226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          +  +C f++++G+Ck+G++CkF H+
  Glyma.10G020700.1.p 342 GVQPCAFYLQNGHCKFGSTCKFDHP 366
                          6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.3E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7044876IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.99593121IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-693120IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-1096120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-598119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178139167IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.624296324IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-5300324IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.385340368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6342371IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-9342366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-5344365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDLYGRGQAR NGSNPVNQPE WRSPGTDTGL EESMWHLTLG GGESYPERPG VPNCVYYMRT  60
GVCGYGSRCR YNHPRDRAAV AAAVRVTGDY PERVGEPPCQ YYLKTGTCKF GASCKFHHPK  120
NGGGYLTQAP LNIYGYPLRP GEKECSYYLK TGQCKFGISC KFHHPQPAGT SLPTSAPQFY  180
QQVQSPTVPL PEQYGGASTS LRVARPPVLP GSYVQGAYGP VLLSPGVVQF PGWSHYSAPV  240
SPVLSPGAQP TVGATSLYGV TQLSSPTSAF ARPYTPLSST TGPSGSNLKD QFFPERPGEP  300
ECQYYLRTGD CKFGLACRYH HPRDHIVARP LLSPVGLPLR PGVQPCAFYL QNGHCKFGST  360
CKFDHPLGST RYTPWVSSFI DVPVTPYPVG SLLSQLAPST TSSELRPELM SGSKKESLAA  420
RISSSGNSSG TSVGLIFSQG GSVSLSNVQL SSQSSAPSKQ *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.407280.0pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G020700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937450.0BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014618380.10.0zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A445IGS60.0A0A445IGS6_GLYSO; Zinc finger CCCH domain-containing protein 32 isoform A
TrEMBLI1L7X30.0I1L7X3_SOYBN; Uncharacterized protein
STRINGGLYMA10G02550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Representative plantOGRP28651131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein