PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.10G020600.1.p | ||||||||
Common Name | GLYMA_10G020600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 448aa MW: 48181.1 Da PI: 8.5369 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.9 | 1.1e-10 | 50 | 75 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++ ++C +++rtG C yG+rC+++H+ Glyma.10G020600.1.p 50 PGVPNCVYYMRTGVCGYGGRCRYNHP 75 5789*********************8 PP | |||||||
2 | zf-CCCH | 41.9 | 1.6e-13 | 96 | 121 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++CkF+H++ Glyma.10G020600.1.p 96 GEPPCQYYLKTGTCKFGASCKFHHPK 121 579*********************96 PP | |||||||
3 | zf-CCCH | 38.9 | 1.5e-12 | 143 | 167 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+CkyG +CkF+H++ Glyma.10G020600.1.p 143 EKECSYYLKTGQCKYGISCKFHHPQ 167 679********************97 PP | |||||||
4 | zf-CCCH | 36.2 | 1e-11 | 292 | 318 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++++rtG Ck+G C+++H++ Glyma.10G020600.1.p 292 PGEPDCQYYLRTGDCKFGLACQYHHPQ 318 5789*********************97 PP | |||||||
5 | zf-CCCH | 32.8 | 1.2e-10 | 339 | 361 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C f++++G+Ck+G++CkF H+ Glyma.10G020600.1.p 339 QPCAFYLQNGHCKFGSTCKFDHS 361 69********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.774 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-8 | 51 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.5E-4 | 55 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.051 | 94 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-7 | 94 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-11 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 97 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 99 | 120 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.849 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.1E-10 | 143 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-5 | 146 | 166 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 291 | 318 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.436 | 291 | 319 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-9 | 293 | 318 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-5 | 296 | 319 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.896 | 335 | 363 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-5 | 335 | 362 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 338 | 366 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 339 | 363 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-8 | 339 | 361 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MDLYGRGPAR NVHNPVNQPE WRSPGTDTGL EESMWHLTLG GGGESYPERP GVPNCVYYMR 60 TGVCGYGGRC RYNHPHDRAA VVAAVRVTGD YPERLGEPPC QYYLKTGTCK FGASCKFHHP 120 KNGGEYLSQA PLNVYGYPLR SDEKECSYYL KTGQCKYGIS CKFHHPQPAG TSLPASAAQF 180 YQQVQSPTVP LPEQYVGASS SLRVARPPIL PGSYVQGAYG PVFLSPGVVQ FPGWNHYSAL 240 PGTQPGVGAT SLYGVTQLSS PTSAFARPYT LLPSSTGLSG SNLKEQLYPK RPGEPDCQYY 300 LRTGDCKFGL ACQYHHPQDH VVAQPLLSPV GLPLRPGLQP CAFYLQNGHC KFGSTCKFDH 360 SLGSMRYSPS ASSLIDVPVT PYLVGSLLSQ LESFSARIPS SGNSSGTSVG LIFSQGGSVL 420 LSDVQLSSQS SAPTNSSRST RQSGEIR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.39134 | 0.0 | stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.10G020600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093745 | 0.0 | BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518955.1 | 0.0 | zinc finger CCCH domain-containing protein 32 isoform X1 | ||||
Refseq | XP_028207352.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like isoform X1 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A0R0HN52 | 0.0 | A0A0R0HN52_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA10G02540.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 | Representative plant | OGRP2865 | 11 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-177 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.10G020600.1.p |