PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G016500.1.p
Common NameGLYMA_10G016500, LOC100780763
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 305aa    MW: 34361.1 Da    PI: 5.2911
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G016500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-1975123355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Glyma.10G016500.1.p  75 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 123
                          9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-2274132IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-3274132IPR001471AP2/ERF domain
SMARTSM003803.1E-3874137IPR001471AP2/ERF domain
PROSITE profilePS5103223.77574131IPR001471AP2/ERF domain
CDDcd000185.70E-3375132No hitNo description
PRINTSPR003677.8E-127586IPR001471AP2/ERF domain
PfamPF008476.2E-1275123IPR001471AP2/ERF domain
PRINTSPR003677.8E-1297113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MCGGAIIADF IPRRGGRRLT ASELWPNSFG KDGDFDFDYS HIADQQRSTL KMSPPPKASE  60
QVENKPVKRQ RKNLYRGIRQ RPWGKWAAEI RDPRKGVRVW LGTFNTAEEA ARAYDREARK  120
IRGKKAKVNF PNEDDEYSIQ ARHPIPPLPF TPQTQNPPLY QQQYRCDLNI APKNLNFEFG  180
YDLNHAGAFP SHVDAVNADS VVVSGDENSG LASGSEGAYS TTEFMGSSQN GNGYLGVTAM  240
EKNEKETEVI EAQEEKNKVQ ELSEELMAYE NYMKFYQIPY YDGQSTAPPN NVQESLVGDL  300
WSFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-21751331574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.233330.0leaf| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G016500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0977380.0BT097738.1 Soybean clone JCVI-FLGm-22B13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241446.10.0uncharacterized protein LOC100780763
RefseqXP_028182587.10.0ethylene-responsive transcription factor ERF073-like
TrEMBLA0A445IH110.0A0A445IH11_GLYSO; Ethylene-responsive transcription factor RAP2-3
TrEMBLC6TJ940.0C6TJ94_SOYBN; Uncharacterized protein
STRINGGLYMA10G02080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.15e-36ethylene-responsive element binding protein