PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G011300.1.p
Common NameGLYMA_10G011300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 324aa    MW: 36530.4 Da    PI: 6.8839
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G011300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.85.4e-34167224259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp+vv++tYeg+H+h+
  Glyma.10G011300.1.p 167 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHP 224
                          8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381304.7E-1371323IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.4E-34151226IPR003657WRKY domain
SuperFamilySSF1182902.88E-29158226IPR003657WRKY domain
PROSITE profilePS5081131.881161226IPR003657WRKY domain
SMARTSM007742.0E-40166225IPR003657WRKY domain
PfamPF031062.1E-26167224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEKKEMAVKT EDAVGSSSFP CYNYSNLYPF SNAFDFSEVE KSSLGFMELL GVQDYSPLLE  60
LPQLSTVSVQ SHHHSTVTVP SDNGKECSEV LNHQPATPNS SSISSASTDA VNDEQKKTLD  120
QAEEDDDDDD EGQHKTKKQL KPKKTNQKRQ REPRFAFMTK SEVDHLEDGY RWRKYGQKAV  180
KNSPFPRSYY RCTSVSCNVK KRVERSFTDP SVVVTTYEGQ HTHPSPVMPR SVVSSGYANN  240
FASVLPLGNY LSQYQQQHHH HQQQKLLVNT LSSLGFPYND SSSPKNAVFI QERRLCSNQG  300
TNAFLRDHGL LQDVVPSHML KEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-28156227778Probable WRKY transcription factor 4
2lex_A4e-28156227778Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.282520.0cotyledon| hypocotyl| leaf| meristem| root| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G011300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3226980.0DQ322698.1 Glycine max WRKY54 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028185598.10.0WRKY transcription factor 23-like
SwissprotO229002e-69WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A0B2Q4L20.0A0A0B2Q4L2_GLYSO; WRKY transcription factor
TrEMBLI1L7N20.0I1L7N2_SOYBN; WRKY transcription factor
STRINGGLYMA10G01450.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.15e-56WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]