PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G010400.1.p
Common NameGLYMA_10G010400, LOC100777932
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 283aa    MW: 32318.9 Da    PI: 4.8354
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G010400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.9e-173380148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd  l+++v+  G g+W++ ar  g++Rt+k+c++rw++yl
  Glyma.10G010400.1.p 33 KGPWTEEEDSVLINYVNFQGEGQWNSLARSAGLKRTGKSCRLRWLNYL 80
                         79********************************************97 PP
2Myb_DNA-binding47.34.7e-1586129146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T +E++l+++++ ++G++ W++Ia+++g gRt++++k++w++
  Glyma.10G010400.1.p  86 RGNITLQEQLLILELHSRWGNR-WAKIAEELG-GRTDNEIKNYWRT 129
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS51294162880IPR017930Myb domain
SuperFamilySSF466893.4E-2930127IPR009057Homeodomain-like
SMARTSM007177.1E-143282IPR001005SANT/Myb domain
PfamPF002494.2E-153380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-213487IPR009057Homeodomain-like
CDDcd001671.85E-93580No hitNo description
PROSITE profilePS5129422.43881135IPR017930Myb domain
SMARTSM007173.0E-1385133IPR001005SANT/Myb domain
PfamPF002494.8E-1486129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2088133IPR009057Homeodomain-like
CDDcd001672.62E-6106129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDTISVQAMR SLSDSDSLSS ATYASEEDMK IKKGPWTEEE DSVLINYVNF QGEGQWNSLA  60
RSAGLKRTGK SCRLRWLNYL RPNVRRGNIT LQEQLLILEL HSRWGNRWAK IAEELGGRTD  120
NEIKNYWRTR VVKQAKQLKC DVNSKQFRDT VRFVWMPRLM EQIQASFRIV PSDSSHGLDQ  180
TTLCNTQQTE SSTDANPTMF CDNSMVSSYS SEVDLQPLSL SDTSTTSSSE SAEKKESISS  240
SLWQQWDYSD LQAFEPCNGF GDADLWTDEN IWFLQQHLAD HL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-233112725120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.83740.0epicotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G010400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5892991e-124KC589299.1 Macrotyloma uniflorum cultivar VZM-1 transcription factor MYB76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536860.10.0transcription factor MYB78
RefseqXP_028183845.10.0transcription factor MYB78-like
SwissprotQ10MB48e-76MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A445IG960.0A0A445IG96_GLYSO; Transcription factor MYB2
TrEMBLI1L7M40.0I1L7M4_SOYBN; Uncharacterized protein
STRINGGLYMA10G01340.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-68myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]