PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G010300.1.p
Common NameGLYMA_10G010300, LOC778065
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 237aa    MW: 27283.1 Da    PI: 9.6674
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G010300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172875148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W  eEd +lv++++ +G g+W+++ar+ g++R++k+c++rw++yl
  Glyma.10G010300.1.p 28 KGPWAVEEDTILVNYIATHGEGHWNSVARCAGLRRSGKSCRLRWLNYL 75
                         79********************************************97 PP
2Myb_DNA-binding47.63.7e-1581124146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T +E+ l++d++ ++G++ W++Ia+ ++ gRt++++k++w++
  Glyma.10G010300.1.p  81 RGNITLQEQILILDLHSRWGNR-WSKIAQQLP-GRTDNEIKNYWRT 124
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.9172375IPR017930Myb domain
SuperFamilySSF466898.39E-3024122IPR009057Homeodomain-like
SMARTSM007176.1E-142777IPR001005SANT/Myb domain
PfamPF002492.2E-152875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-212982IPR009057Homeodomain-like
CDDcd001674.45E-103075No hitNo description
PROSITE profilePS5129422.39376130IPR017930Myb domain
SMARTSM007178.4E-1380128IPR001005SANT/Myb domain
PfamPF002491.7E-1381124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2183128IPR009057Homeodomain-like
CDDcd001673.63E-985124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDVKKGGSVV QAQVKLQKHN EKEMGMRKGP WAVEEDTILV NYIATHGEGH WNSVARCAGL  60
RRSGKSCRLR WLNYLRPDVR RGNITLQEQI LILDLHSRWG NRWSKIAQQL PGRTDNEIKN  120
YWRTRVIKQA KQLKCDVNSK QFRDTLRYVW MPRLLERLQP TSQALEPNQS GLVLHASSSL  180
LPSNSDHSIE RGSDLWPGFN NQMLLEQGSG GDLLESLWDD DNMCFLQQLS YDLQMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-2331224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.248620.0cotyledon| flower| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G010300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150414e-54AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536859.11e-175transcription factor MYB78
SwissprotQ10MB49e-79MYB2_ORYSJ; Transcription factor MYB2
TrEMBLI1L7M31e-174I1L7M3_SOYBN; Uncharacterized protein
STRINGGLYMA10G01330.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-77myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]