PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G007000.1.p
Common NameGLYMA_10G007000, Glyma10g00980.1, LOC100785936
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 168aa    MW: 18822.5 Da    PI: 8.8547
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G007000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-184596155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         s ++GVr+++ +g+++AeIrd +    +  r++lg+f+ ae Aa a+++a+ +++g
  Glyma.10G007000.1.p 45 SSFRGVRRRP-WGKFAAEIRDSTR---HgVRVWLGTFDNAEAAALAYDQAAFSMRG 96
                         679*******.**********422...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.57E-1945105No hitNo description
SuperFamilySSF541715.95E-2245106IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-2946105IPR001471AP2/ERF domain
PROSITE profilePS5103222.52446104IPR001471AP2/ERF domain
SMARTSM003801.5E-3546110IPR001471AP2/ERF domain
PfamPF008474.0E-134696IPR001471AP2/ERF domain
PRINTSPR003671.7E-124758IPR001471AP2/ERF domain
PRINTSPR003671.7E-1286106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDSSSHQLLP FNENDPEDML LYGIITSCQE KKVTINQEQV NKKRSSFRGV RRRPWGKFAA  60
EIRDSTRHGV RVWLGTFDNA EAAALAYDQA AFSMRGSGAV LNFPVEKVKE SLRDMKLDGC  120
SPVVALKRRH SLAAKRKKED VLVFHDLGAD YLEHLLMCSD LPSTTIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2940106874Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.283650.0cotyledon| hypocotyl
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G007000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310840.0KT031084.1 Glycine max clone HN_CCL_193 AP2-EREBP transcription factor (Glyma10g00980.1) mRNA, partial cds.
GenBankKT0312750.0KT031275.1 Glycine max clone HN_CCL_98 AP2-EREBP transcription factor (Glyma10g00980.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535804.11e-123ethylene-responsive transcription factor 1B
SwissprotA0A3Q7I5Y91e-61ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLI1L7I11e-122I1L7I1_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA10G00980.11e-123(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-53ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  4. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]