PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.10G003100.1.p
Common NameGLYMA_10G003100, LOC100806789
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 338aa    MW: 39122.8 Da    PI: 4.3526
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.10G003100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.56e-35381292102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+i++d +++e++sws+ +nsfvv+d++ f+ ++Lp+yF+h+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  Glyma.10G003100.1.p  38 FLTKTYDIVDDVSTDEIVSWSRGNNSFVVWDPQAFSVTLLPRYFEHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQK 118
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+rkk+
  Glyma.10G003100.1.p 119 HLLKNIRRKKT 129
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.2E-3834127IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5934127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.02E-3434127IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-193861IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3138127IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-1989101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MNPNNDGPMI LVKEEFPEGV AIAPQPLEGL HEIGPPPFLT KTYDIVDDVS TDEIVSWSRG  60
NNSFVVWDPQ AFSVTLLPRY FEHNNFSSFV RQLNTYGFRK VDPDKWEFAN EGFLRGQKHL  120
LKNIRRKKTL TNQQQALPID HCVEVGRFGS LDGEVDALRR DKQVLMVELV KLRQQQQNTR  180
NNLQSMENRL KRTQKQQQQM MKFLTRAMQN PNFLQQLVQQ REWRKDLEEA ATFSNKRIRS  240
DVEECSSFVK LEHEEEHNND ITSSELEVSD MDLVIMNTEE EEEKLLGAEI ESINEEVLWE  300
ELLNEGTEED VLIGLEEDDE DIVVLAEELG YLASTPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-253612918122Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.10G003100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003536831.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-116HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLI1L7E20.0I1L7E2_SOYBN; Uncharacterized protein
STRINGGLYMA10G00560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-99heat shock transcription factor A6B