PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G284500.1.p | ||||||||
Common Name | GLYMA_09G284500, LOC100795254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 240aa MW: 25676.7 Da PI: 9.6827 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.3 | 1.1e-37 | 39 | 197 | 2 | 119 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as+++ ++++ + Glyma.09G284500.1.p 39 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSTVSDHKPLL-----Pppt 123 78**************************************************************99999776222222222.....1233 PP TCP 89 ..........................................................kaaksaakskksqksaasalnlakesrakar 119 + +s+ + +++++++++ Glyma.09G284500.1.p 124 pfilgkrirpdddsaakddavslvapptppalwalpprpdfgqvwsfaaapelvsvspQ---------------NSMFHHHHQHHQQQQ 197 33444444455555556666777777777788888888888865554444444444431...............333333333332222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 45 | 99 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.4E-31 | 45 | 117 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSNSDGATNA VPPNDANNNT IVEYQQRTTT TTAAAAALAV KKPPSKDRHS KVDGRGRRIR 60 MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GSGTTPASFS TVSDHKPLLP 120 PPTPFILGKR IRPDDDSAAK DDAVSLVAPP TPPALWALPP RPDFGQVWSF AAAPELVSVS 180 PQNSMFHHHH QHHQQQQQQA AMGEASAARL GNYLPGHLNL LASLSGGHGN SGRRDDEPR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21540 | 0.0 | hypocotyl| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G284500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003533698.1 | 1e-176 | transcription factor TCP7 | ||||
Refseq | XP_025979674.1 | 1e-176 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 6e-87 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | K7LGM6 | 1e-175 | K7LGM6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G42140.2 | 1e-175 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 | Representative plant | OGRP8514 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-74 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G284500.1.p |
Entrez Gene | 100795254 |