PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.09G284300.1.p | ||||||||
Common Name | GLYMA_09G284300, LOC100786264 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 241aa MW: 25777.8 Da PI: 9.6827 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.4 | 1.1e-37 | 40 | 198 | 2 | 119 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as+++ ++++ + Glyma.09G284300.1.p 40 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFSTVSDHKPLL-----Pppt 124 78**************************************************************99999776222222222.....1233 PP TCP 89 ..........................................................kaaksaakskksqksaasalnlakesrakar 119 + +s+ + +++++++++ Glyma.09G284300.1.p 125 pfilgkrirpdddsaakddavslvapptppalwalpprpdfgqvwsfaaapelvsvspQ---------------NSMFHHHHQHHQQQQ 198 33444444455555556666777777777788888888888865554444444444431...............333333333332222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.209 | 46 | 100 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.4E-31 | 46 | 118 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MSNSDGATNA VPPNDANNNT IVEYQQRTTT TTTAAAAALA VKKPPSKDRH SKVDGRGRRI 60 RMPIICAARV FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGSGTTPASF STVSDHKPLL 120 PPPTPFILGK RIRPDDDSAA KDDAVSLVAP PTPPALWALP PRPDFGQVWS FAAAPELVSV 180 SPQNSMFHHH HQHHQQQQQQ AAMGEASAAR LGNYLPGHLN LLASLSGGHG NSGRRDDEPR 240 * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.21540 | 0.0 | hypocotyl| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.09G284300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534684.1 | 1e-177 | transcription factor TCP7 | ||||
Refseq | XP_025979673.1 | 1e-177 | transcription factor TCP7 | ||||
Refseq | XP_028248094.1 | 1e-177 | transcription factor TCP7-like | ||||
Refseq | XP_028248096.1 | 1e-177 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 5e-87 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A445J7G6 | 1e-175 | A0A445J7G6_GLYSO; Transcription factor TCP7 | ||||
TrEMBL | K7LGM5 | 1e-175 | K7LGM5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G42120.2 | 1e-176 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 | Representative plant | OGRP8514 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-74 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.09G284300.1.p |
Entrez Gene | 100786264 |