PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G280200.1.p
Common NameGLYMA_09G280200, LOC100776837
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 544aa    MW: 60731.1 Da    PI: 7.2314
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G280200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.67.9e-31204261260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +Dg+nW KYGqK+vkgse+prsYY+Ct+++C+vkkkve+s  d++++ei+Y+g+H h+k
  Glyma.09G280200.1.p 204 EDGFNWIKYGQKQVKGSENPRSYYKCTHPNCSVKKKVEKSL-DGHITEIVYKGQHSHPK 261
                          7****************************************.***************85 PP
2WRKY100.11.3e-31372430159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYGqK+vkg+ ++rsYY+Ct +gC+v+k+ver+a+d k+v++tYeg+Hnh+
  Glyma.09G280200.1.p 372 LDDGFRWRKYGQKVVKGNSNARSYYKCTAPGCSVRKHVERAAHDIKAVITTYEGKHNHD 430
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-26193262IPR003657WRKY domain
PROSITE profilePS5081121.39198262IPR003657WRKY domain
SuperFamilySSF1182901.83E-23199262IPR003657WRKY domain
SMARTSM007741.2E-33203261IPR003657WRKY domain
PfamPF031063.0E-23204260IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-35357432IPR003657WRKY domain
SuperFamilySSF1182904.05E-27365432IPR003657WRKY domain
PROSITE profilePS5081135.335367432IPR003657WRKY domain
SMARTSM007741.1E-35372431IPR003657WRKY domain
PfamPF031069.2E-24373430IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MTMGDHNNWE TSELSLNNQY QNHNQVGLDV PKFKSVQPPS LLFSPSSISP SSYFNFSSAF  60
SPSEFLNSPL FFPSPNIFAS PTTEALVGQS FNWRNGSGEE QQRGKEDEKN YSDFSFQTQI  120
QSSSNMFQVE PLKKQDMWKF NEPTKQTDFS PERTATKSEF PSIQSFSSEM AEGKPEIQSS  180
SVPGSGYFDY TSASQSVREQ KRTEDGFNWI KYGQKQVKGS ENPRSYYKCT HPNCSVKKKV  240
EKSLDGHITE IVYKGQHSHP KPQSTRRTNS QSIHQPSSSC TNSGITDHSV VTLGNPQMDH  300
FSIQEDSSAS VGEEEFEQTP QTSYSGGDGD NLGPDAKRWK GDNENDGYSV SASRSVREPR  360
VVVETTSEID ILDDGFRWRK YGQKVVKGNS NARSYYKCTA PGCSVRKHVE RAAHDIKAVI  420
TTYEGKHNHD VPAARGSGKY NSNRNSQNSN ISAPIRPSAV NCYSNSSSFT NSLYNNTRLP  480
ATGNQESFSL DKFKNPGSFG YSDLNRPMGS HTNHAQYTDA AYSRAKDERK DDSFLQSFLS  540
KDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-36191433578Probable WRKY transcription factor 4
2lex_A3e-36191433578Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.297190.0cotyledon| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G280200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534668.20.0probable WRKY transcription factor 33
SwissprotQ6IEQ71e-110WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0R0IK300.0A0A0R0IK30_SOYBN; Uncharacterized protein
STRINGGLYMA09G41670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-91WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]