PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.09G274000.1.p | ||||||||
Common Name | GLYMA_09G274000, Glyma09g41050.1, LOC100805895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 301aa MW: 34223.8 Da PI: 6.3483 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 80 | 2.5e-25 | 121 | 181 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqKe+ +++fpr+YYrCt++ gC+++k+v+r +e+p ++++tY g+H+++ Glyma.09G274000.1.p 121 DDGHHWRKYGQKEILNAKFPRNYYRCTHKfdqGCQATKQVQRVQEEPILFKTTYYGHHTCK 181 8***************************9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.2E-26 | 108 | 182 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.346 | 115 | 178 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-24 | 118 | 181 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 120 | 182 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-24 | 121 | 181 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
MENLGGSSRR KAIEELLRGR DSAQQLKSVI NGTYDDGSAT PFAQQLVKEV LMSFTNSLLF 60 LHNNPTSESH HVFNVQVWDS PKSEDSQESN CKSSTIKEPR GCYKRRRTEQ TWEKESEAPI 120 DDGHHWRKYG QKEILNAKFP RNYYRCTHKF DQGCQATKQV QRVQEEPILF KTTYYGHHTC 180 KNSANPDIIL DPMSPSSSSK FLSFDNSFST PSKQECPFLS SSNNFPSSSS VKRECKEEVP 240 PSISSNDYLI SSDLTFDSSP RHHVTLSSTL DSEYKSVDIS DVLYDSAQLD FVFEPFLEIR 300 * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-21 | 120 | 181 | 8 | 69 | OsWRKY45 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.31827 | 0.0 | cotyledon| flower| hypocotyl| leaf| pod| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.09G274000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT031236 | 0.0 | KT031236.1 Glycine max clone HN_CCL_113 WRKY transcription factor (Glyma09g41050.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001302438.1 | 0.0 | probable WRKY transcription factor 70-like | ||||
TrEMBL | I1L6Z7 | 0.0 | I1L6Z7_SOYBN; WRKY transcription factor | ||||
STRING | GLYMA09G41050.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1995 | 34 | 86 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56400.1 | 2e-39 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.09G274000.1.p |
Entrez Gene | 100805895 |
Publications ? help Back to Top | |||
---|---|---|---|
|