PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G257700.3.p
Common NameGLYMA_09G257700, LOC100780550
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 652aa    MW: 73304.4 Da    PI: 5.9977
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G257700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.8e-07544592247
                          SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                          g+WT+ E+++++d+vk  +       W+   +t++ ++++++++s+++++
  Glyma.09G257700.3.p 544 GSWTEKEEKKFKDVVKSNPASlekcFWDHLFKTFP-KKSREDLVSYYFNV 592
                          79*****************99**************.9**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101117.539165IPR001606ARID DNA-binding domain
SMARTSM005011.2E-4166IPR001606ARID DNA-binding domain
SMARTSM010140.0033161No hitNo description
PfamPF013885.7E-8460IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.604.7E-13472IPR001606ARID DNA-binding domain
SuperFamilySSF467749.29E-15473IPR001606ARID DNA-binding domain
SMARTSM011899.7E-4445497IPR000949ELM2 domain
CDDcd001670.0019545593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MMSNGDPLDL YKLFMVVKEK GGYDAVCKNK LWDLVGEEYG LGVKVGSSVE LAYSKHLSSL  60
EACLKNVADG KLPECGLVDD RVKFHKHLME AQAESLLDDS GEKEVGDGLE RRACCCPDGR  120
KLGGSNRVKG VKPESNVAEL ERVYEYLDGT KSCVSDSVKG KKSDYNGDEF DNVCDFLDGR  180
ELCGTNRVKG MSPESNGDKK VQSEGLVDLD MLDHGTDEHI IRNLCSLNTE RDILEEFDGG  240
KILTVDASDA ESNMPRLSDG SKSCDNDDDD DSDDVLILDP SGVDKEIFGR KRKRESKSEM  300
LSWITSIAKN PCDPTVGSIP EKSKWKSYSS QEIWKQALLF REAVFLKKDF ETISEQLSWQ  360
GQKMHPSMYD DRVGAIYNLR QRLKCDKRVL FGKATSEGVS SASSGGTHGY LERTPSSRAE  420
DCAEKQLPDS CTARSSLDIC ARVPIPLGPN HQAEVPEWTD ITYEVDSKWL GTQIWPLKTV  480
NSKHHLFERD PIGEGRQDSC SCRVQGSVEC VRFHIAKKRA KVKLELGEAF HQWNLHKVGE  540
EIGGSWTEKE EKKFKDVVKS NPASLEKCFW DHLFKTFPKK SREDLVSYYF NVFLLQRRAY  600
QNRHTPDNID SDDDESECTP LRKVFGHHPP KARSFTLLSP KKATFKRENN K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G257700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587842.10.0AT-rich interactive domain-containing protein 1
RefseqXP_006587843.10.0AT-rich interactive domain-containing protein 1
TrEMBLK7LG340.0K7LG34_SOYBN; Uncharacterized protein
STRINGGLYMA09G39361.10.0(Glycine max)