PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G250500.1.p
Common NameGLYMA_09G250500, LOC100813723
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 735aa    MW: 80939.6 Da    PI: 6.2903
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G250500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23e-32264320259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+g Hnh 
  Glyma.09G250500.1.p 264 EDGYNWRKYGQKQVKGSEYPRSYYKCTQPKCQVKKKVERSH-DGQITEIIYKGAHNHA 320
                          7****************************************.***************7 PP
2WRKY102.72.1e-32478536159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++++ k+v +tYeg+Hnhe
  Glyma.09G250500.1.p 478 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCMVRKHVERASQNLKYVLTTYEGKHNHE 536
                          59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28250322IPR003657WRKY domain
PROSITE profilePS5081123.732258322IPR003657WRKY domain
SuperFamilySSF1182909.81E-25260322IPR003657WRKY domain
SMARTSM007741.5E-35263321IPR003657WRKY domain
PfamPF031061.5E-24264319IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-35463538IPR003657WRKY domain
SuperFamilySSF1182907.32E-28471538IPR003657WRKY domain
PROSITE profilePS5081137.069473538IPR003657WRKY domain
SMARTSM007743.0E-37478537IPR003657WRKY domain
PfamPF031061.1E-24479536IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MEQDNLNNNN NCDEETFVCD SRETKRSIAE RRGFNSNAAR INTALFRTAT STTNPSPSLA  60
ARSPRLTIPP GISPTDLLDS PIMLPNSQAI SPTTGSFFML PPLSHEGSML TTEQGNVDVS  120
TASDVDASFK FKPRGHFDPN HLPPYSASLN QVSSNFHSVK GGNRESHLLA QVQPPLDFSF  180
RADFSKGHSV KNSEVNAYND MKMVNDVILN ANNVEMPMSG SEEVSDESAL PKNTINGEDF  240
GGQPASEGEQ KEASHTTGAV RTSEDGYNWR KYGQKQVKGS EYPRSYYKCT QPKCQVKKKV  300
ERSHDGQITE IIYKGAHNHA QPHPGHRASS LSTDEVSDMA GDSTLAKIEG GYVWRNIQTG  360
LRETKQSFDW KADGQERTPT TSAVTELSDP ISTNNAKSLC MLESEDTPEL SSTLASHDGD  420
EDGTAQALVS AEDEAENDEL DSKRRKKESY AVEPNLPPTR AVREPRVVVQ IESDVDILDD  480
GYRWRKYGQK VVKGNPNPRS YYKCTSAGCM VRKHVERASQ NLKYVLTTYE GKHNHEVPTA  540
RTNNQVNSSD GGLPPNGANG QVALTLPKPE THQTLFGHHF DRKPEFSNEF LRASLVGSFS  600
NDMKFGPSTL CQMKYPSLNN TMPYGSYGLN HEHCTAPQAG SIASMFPDFP MPLPLNLPSS  660
GLNFNCVKPM NRVQSFLSGQ QVKDIDAGFL RPKQEQKDDT MYGSCMPPLD HSNASLTSSP  720
SPSIYQRMMQ NFPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32242538177Probable WRKY transcription factor 4
2lex_A2e-32242538177Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G250500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617875.10.0probable WRKY transcription factor 20
TrEMBLK7LFY40.0K7LFY4_SOYBN; Uncharacterized protein
STRINGGLYMA09G38581.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.14e-97WRKY DNA-binding protein 2