PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G241800.1.p | ||||||||
Common Name | GLYMA_09G2418001, LOC100804456 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 230aa MW: 25443.4 Da PI: 8.3781 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.7e-19 | 68 | 122 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k Glyma.09G241800.1.p 68 RKKLRLTKEQSMVLEETFKEHSTLNPKRKQALAEELNLKPRQVEVWFQNRRARTK 122 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.8 | 4.5e-41 | 68 | 157 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq+ +LEe+F+e+++L+p+rK++la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+y++l+een+rL+kev+eLr + Glyma.09G241800.1.p 68 RKKLRLTKEQSMVLEETFKEHSTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCYENLTEENRRLHKEVQELR-A 156 69*************************************************************************************9.5 PP HD-ZIP_I/II 91 l 91 l Glyma.09G241800.1.p 157 L 157 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 5.2E-6 | 2 | 36 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 51 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.05E-19 | 55 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.896 | 64 | 124 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-16 | 66 | 128 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.24E-17 | 68 | 125 | No hit | No description |
Pfam | PF00046 | 6.5E-17 | 68 | 122 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 99 | 122 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.9E-12 | 124 | 158 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.0E-26 | 124 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MIRGIDVNSA AECDGVSSPN SAVSSVSGGD GKQSERDDDN NAAAVAGERT SCSRGSDDDD 60 GGGSDASRKK LRLTKEQSMV LEETFKEHST LNPKRKQALA EELNLKPRQV EVWFQNRRAR 120 TKLKQTEVDC EYLKRCYENL TEENRRLHKE VQELRALKLS PQMYMHMNPP TTLTICPSCE 180 RTHSFASSST ATIHSAVAAT SSNRKLFGTN IRLPVSFNTR PFEGPIPRP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 72 | SRKKLRL |
2 | 116 | 124 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.56639 | 0.0 | somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G241800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235892 | 0.0 | AC235892.2 Glycine max clone GM_WBc0089E01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534468.1 | 1e-171 | homeobox-leucine zipper protein HAT3 | ||||
Refseq | XP_006587771.1 | 1e-171 | homeobox-leucine zipper protein HAT3 | ||||
Swissprot | P46602 | 5e-82 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | I1L615 | 1e-170 | I1L615_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G37680.1 | 1e-171 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1239 | 34 | 105 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 2e-69 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G241800.1.p |
Entrez Gene | 100804456 |
Publications ? help Back to Top | |||
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