PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G240000.1.p
Common NameGLYMA_09G240000, LOC100792084
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 542aa    MW: 59335.5 Da    PI: 7.469
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G240000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.99.8e-29191250159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  k +++pr+YYrCt a +Cpv+++v+r+aed +++++tYeg+Hnh+
  Glyma.09G240000.1.p 191 MNDGCQWRKYGQKIAKRNPCPRAYYRCTVApTCPVRRQVQRCAEDLSILITTYEGTHNHP 250
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-30177252IPR003657WRKY domain
SuperFamilySSF1182903.79E-26184252IPR003657WRKY domain
PROSITE profilePS5081126.9186252IPR003657WRKY domain
SMARTSM007748.1E-34191251IPR003657WRKY domain
PfamPF031062.0E-25192250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSKISGPSGP DEIEEKRVTK EEKIKSAKTE MGEVKEENER LKMMLERVEK DYHSLQLRFF  60
DIHHEDVSKK GLADSSTCHD HETEELVSLC LGRSPMVPKK EARIGNSNKL KEDVGPNLTL  120
GLDSKHLLSM EVVSDFSPMN SSEQPKEAEE EVTLSTNQSA KVINVNDDMS DQMPAKRARV  180
SVRARCDTPT MNDGCQWRKY GQKIAKRNPC PRAYYRCTVA PTCPVRRQVQ RCAEDLSILI  240
TTYEGTHNHP LPVSATAMAS TTSAAASMLL SGSSTSHHPT NHNSASFGNA PTTLQSGLSF  300
SHQFDESRTK QVFSPPNHAS LHMFPTITLD MTYSASNSSS LTQFHHRLPS TMASISNLKF  360
SPASLSCSQD NNFIPSIWSK GGDTTTPPII DKIPTRPVIK GNPYFQENFY QQSITNQTPF  420
KEALAETITK AISTDPSLRS VIAAAVSSIV GNGSNSGNQE GAENVLGSGL NLKLGDHLQL  480
ASSNPLNQNG KGCLTGYFKS LSSKNSEAGN FIFLQPPLPF SFSKSGTNQL NHYVPEMNTH  540
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-19178252174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G240000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533547.10.0probable WRKY transcription factor 72
TrEMBLI1L5Z40.0I1L5Z4_SOYBN; Uncharacterized protein
STRINGGLYMA09G37470.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-75WRKY DNA-binding protein 72