PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G239400.1.p | ||||||||
Common Name | GLYMA_09G239400, LOC100797920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 271aa MW: 30941.8 Da PI: 6.844 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.9e-18 | 81 | 133 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ F +++ e++ +LAk lgL+ rqV +WFqNrRa++k Glyma.09G239400.1.p 81 KKRLNLEQVKALEKSFDLGNKLEPERKVQLAKALGLQPRQVAIWFQNRRARWK 133 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 125.8 | 1.9e-40 | 79 | 171 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekk+rl+ eqvk+LE+sF+ +kLeperKv+la++Lglqprqva+WFqnrRAR+ktk+lEk+ye+Lk++++a+k++n+ L+ e+++L++e Glyma.09G239400.1.p 79 EKKKRLNLEQVKALEKSFDLGNKLEPERKVQLAKALGLQPRQVAIWFQNRRARWKTKHLEKEYEVLKKQFEAVKADNDVLKVENQKLQAE 168 69***************************************************************************************9 PP HD-ZIP_I/II 91 lke 93 l++ Glyma.09G239400.1.p 169 LQA 171 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.455 | 75 | 135 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.58E-18 | 77 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 8.5E-18 | 78 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.27E-15 | 80 | 136 | No hit | No description |
Pfam | PF00046 | 1.5E-15 | 81 | 133 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-19 | 87 | 134 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.3E-6 | 106 | 115 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 110 | 133 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.3E-6 | 115 | 131 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.8E-12 | 135 | 174 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MAFPPPHGFT FNTTHEEDHH HLPPTSLNPF PSLPPQHFQG GASFMLKRSM SFSGIENKCD 60 EVLHGDDELS DDGIFQCGEK KKRLNLEQVK ALEKSFDLGN KLEPERKVQL AKALGLQPRQ 120 VAIWFQNRRA RWKTKHLEKE YEVLKKQFEA VKADNDVLKV ENQKLQAELQ AVKSRDWCEA 180 GMMSHKKETE GSWSNGSDNS LEINLDHSRT LGLNSPISSQ NGKNLLLPNS LNPTSITQLL 240 QDDGLCNMFH NIDAQQNFWP WPDQQHQRFH * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G239400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235119 | 1e-155 | AC235119.1 Glycine max strain Williams 82 clone GM_WBa0029B22, complete sequence. | |||
GenBank | AC235240 | 1e-155 | AC235240.1 Glycine max strain Williams 82 clone GM_WBb0029M05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534456.1 | 0.0 | homeobox-leucine zipper protein HAT7 | ||||
Refseq | XP_028180316.1 | 0.0 | homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q00466 | 8e-74 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | I1L5Z0 | 0.0 | I1L5Z0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G37410.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 3e-75 | homeobox 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G239400.1.p |
Entrez Gene | 100797920 |