PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G238400.1.p
Common NameGLYMA_09G238400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 309aa    MW: 33433.2 Da    PI: 9.2296
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G238400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer772.6e-24571011659
          ZF-HD_dimer  16 slGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                          +lGgha+DGCgEfmps++++ ++++++kCaACgCHRnFHRre+ee
  Glyma.09G238400.1.p  57 HLGGHALDGCGEFMPSPTATaADPSSIKCAACGCHRNFHRREPEE 101
                          58***************99999*******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152318.9834798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-165798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.1E-225798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.6E-195799IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466899.27E-20172240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-30173241IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-25179236IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MKQKHRPGSP PPSLPQRQKP HLSRMVSSNA PTTTTTSTTL SLRWLPTKNA SKITPPHLGG  60
HALDGCGEFM PSPTATAADP SSIKCAACGC HRNFHRREPE EPPIASTTTH VIEYQPHHRH  120
HPPPPLHAAA VATRSPNSAS PPPISSSYYP SAPHMLLALS AGLAAPPEST AAPAAAPTRK  180
RFRTKFSQEQ KEKMHKFAEK VGWKIQKRDE DLIHEICNEV GVDRSVLKVW MHNNKNTFAK  240
KDNNNIVTSN DINITTKNNI STDNDANGSD VKVFENPNND GGEDRAEDPS SNHYDGVNVV  300
GANGSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-211782371675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.293460.0hypocotyl| root| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G238400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028248641.11e-137zinc-finger homeodomain protein 9-like
SwissprotQ9LXG01e-56ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A0R0IIF10.0A0A0R0IIF1_SOYBN; Uncharacterized protein
STRINGGLYMA18G49390.11e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.16e-48homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]