PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G235700.1.p
Common NameGLYMA_09G235700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 364aa    MW: 41119.2 Da    PI: 6.0143
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G235700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.66.7e-55191451129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lp+GfrFhP+deel+++yL+kkv ++ + +  +i+evd++k+ePwdLp  +k +e+ewyfF+ rd+ky+tg r+nrat++gyWkatgkd+
  Glyma.09G235700.1.p  19 LPAGFRFHPRDEELINHYLTKKVVDNCFCA-VAIAEVDLNKCEPWDLPGLAKMGETEWYFFCVRDRKYPTGLRTNRATDAGYWKATGKDR 107
                          799***********************9877.67***************8888899*********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e++  +++l+g+kktLvfykgrapkgekt+Wvmheyrle
  Glyma.09G235700.1.p 108 EIIM-ENALIGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 145
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-6316166IPR003441NAC domain
PROSITE profilePS5100558.75619166IPR003441NAC domain
PfamPF023652.2E-2820144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGSMENVSKP RKENQKFELP AGFRFHPRDE ELINHYLTKK VVDNCFCAVA IAEVDLNKCE  60
PWDLPGLAKM GETEWYFFCV RDRKYPTGLR TNRATDAGYW KATGKDREII MENALIGMKK  120
TLVFYKGRAP KGEKTNWVMH EYRLEGKHNQ PNPGKSEWVI CRVFEKSPCG KKMHVLKCGR  180
LNNSSGEEPS SCASLLPPLI DSSPYNSETR TTTAGELSQL TCFSDPNQTE DQNNTHDDIV  240
DSMETPILNF SPSSRPDDAS TLAKATLSSA SNQSAQIAHQ IGNSQFPDYY HVPQEQSMLR  300
MLMEKQGPIA NQIQKPEFSE GRDFDADISS MIYNNDMMHR MFGNQEHSSA SAGPVDTDFL  360
WNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-521617214171NO APICAL MERISTEM PROTEIN
1ut4_B4e-521617214171NO APICAL MERISTEM PROTEIN
1ut7_A4e-521617214171NO APICAL MERISTEM PROTEIN
1ut7_B4e-521617214171NO APICAL MERISTEM PROTEIN
3swm_A4e-521617217174NAC domain-containing protein 19
3swm_B4e-521617217174NAC domain-containing protein 19
3swm_C4e-521617217174NAC domain-containing protein 19
3swm_D4e-521617217174NAC domain-containing protein 19
3swp_A4e-521617217174NAC domain-containing protein 19
3swp_B4e-521617217174NAC domain-containing protein 19
3swp_C4e-521617217174NAC domain-containing protein 19
3swp_D4e-521617217174NAC domain-containing protein 19
4dul_A4e-521617214171NAC domain-containing protein 19
4dul_B4e-521617214171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G235700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX3923990.0JX392399.1 Glycine max NAC domain protein (NLP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533533.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_006587743.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_006587744.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_025985636.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_025985637.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_025985638.10.0NAC domain-containing protein 100-like isoform X1
RefseqXP_028180149.10.0NAC domain-containing protein 100-like
RefseqXP_028180150.10.0NAC domain-containing protein 100-like
RefseqXP_028180151.10.0NAC domain-containing protein 100-like
RefseqXP_028180152.10.0NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-106NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A445J5870.0A0A445J587_GLYSO; NAC domain-containing protein 100 isoform A
TrEMBLI1L5V30.0I1L5V3_SOYBN; Uncharacterized protein
STRINGGLYMA09G37050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-107NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]