PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G235600.2.p
Common NameGLYMA_09G235600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 357aa    MW: 39285.4 Da    PI: 6.7595
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G235600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-163378148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Glyma.09G235600.2.p 33 RGKFSMQEEQTIIQLHALLGNR-WSSIATHLP-KRTDNEIKNYWNTHL 78
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.286127IPR017877Myb-like domain
SuperFamilySSF466891.13E-201387IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-101340IPR009057Homeodomain-like
PROSITE profilePS5129426.0252882IPR017930Myb domain
SMARTSM007171.6E-153280IPR001005SANT/Myb domain
PfamPF002496.9E-163378IPR001005SANT/Myb domain
CDDcd001676.25E-113578No hitNo description
Gene3DG3DSA:1.10.10.605.2E-224179IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAMEAGVLCQ QKLRCGKSCR LRWTNYLRPD IKRGKFSMQE EQTIIQLHAL LGNRWSSIAT  60
HLPKRTDNEI KNYWNTHLKK RLDKMGIDPV THKPKNDALL STEGPSKIAA NISHMAQWES  120
ARLEAEARLA RESKLRSSSH SSSSSLHHTL IGTSASSSSS LSLDHAWKNG GSTITITVNA  180
TRVSDLESPT STLSENNVPP INNITSTVIE FVGSSERRTV KEEGDQEWNK LGYHESSTHL  240
GEYKDGMENS MPFTSSLHEL TMTMATTWGS STSSAHEHAH VAEEGCFTNL LLNTNSGGHL  300
SLSPEDGGES NYCHNNAGSS DAGSGNNGDL YQENKNYWNN ILNLMNYSSP SDSPMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-18128338109B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, epidermis and mesophyll cells of young leaves, stems, petals, sepals, carpels and stamens. {ECO:0000269|PubMed:23709630}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269|PubMed:17376813, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G235600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7549271e-106JF754927.1 Lotus japonicus MIXTA-like transcription factor (MYB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587742.10.0transcription factor MYB16
RefseqXP_028179834.10.0transcription factor MYB16-like
SwissprotQ9LXF11e-83MYB16_ARATH; Transcription factor MYB16
TrEMBLA0A0R0IJW80.0A0A0R0IJW8_SOYBN; Uncharacterized protein
STRINGGLYMA09G37040.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.12e-66myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  4. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]