PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G235100.1.p
Common NameGLYMA_09G235100, LOC100780023
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 238aa    MW: 26936.3 Da    PI: 7.9052
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G235100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.6e-17956148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W++ Ed+ll+ +v+++G g+W++++++ g++R++k+c++rw++yl
  Glyma.09G235100.1.p  9 KGTWSQIEDDLLKACVQLYGEGNWHLVPKRAGLNRCRKSCRLRWLNYL 56
                         799*******************************************97 PP
2Myb_DNA-binding46.77.2e-1562106147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg ++++E +  ++++k+lG++ W++Ia +++ gRt +++k++w++y
  Glyma.09G235100.1.p  62 RGDFSEDEIDMMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTY 106
                          899*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.437460IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-21559IPR009057Homeodomain-like
SuperFamilySSF466891.45E-276103IPR009057Homeodomain-like
SMARTSM007172.3E-15858IPR001005SANT/Myb domain
PfamPF002491.0E-15956IPR001005SANT/Myb domain
CDDcd001672.68E-101156No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2260111IPR009057Homeodomain-like
PROSITE profilePS5129418.45561111IPR017930Myb domain
SMARTSM007171.2E-1361109IPR001005SANT/Myb domain
PfamPF002491.8E-1362106IPR001005SANT/Myb domain
CDDcd001671.36E-965106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEGSSGVRKG TWSQIEDDLL KACVQLYGEG NWHLVPKRAG LNRCRKSCRL RWLNYLKPNI  60
KRGDFSEDEI DMMIRLHKLL GNRWSLIAGR LPGRTSNDVK NYWNTYARRK LHSHKKDNNI  120
EKQARAKTTV KPHEVIKPVP RALTKTSPRL QGKFINSSEV GVSHEEGATS ISGSGNWWET  180
FLDDKEDIEE GNNNKCFFGG EDGALDLWGE ELNSIACDFL TQGETWSDFL LDLGLGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2331111108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Function -- GeneRIF ? help Back to Top
  1. Data suggests that loss of function for one particular seed coat-expressed R2R3 MYB gene is responsible for the brown seed coat/hilum phenotype in soybean. [MYB]
    [PMID: 22070454]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G235100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9342800.0AB934280.1 Glycine max gene for MYB transcription factor, complete cds, allele: R, cultivar: Clark.
GenBankAB9342810.0AB934281.1 Glycine max gene for MYB transcription factor, complete cds, allele: r-m.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357196.11e-176R2R3 MYB transcription factor
RefseqXP_028248393.11e-176transcription factor MYB90-like
SwissprotQ9FNV94e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A445J5651e-174A0A445J565_GLYSO; Transcription factor MYB113
TrEMBLK7LFP21e-174K7LFP2_SOYBN; MYB transcription factor
STRINGGLYMA09G36983.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-57myb domain protein 113
Publications ? help Back to Top
  1. Gillman JD,Tetlow A,Lee JD,Shannon JG,Bilyeu K
    Loss-of-function mutations affecting a specific Glycine max R2R3 MYB transcription factor result in brown hilum and brown seed coats.
    BMC Plant Biol., 2011. 11: p. 155
    [PMID:22070454]
  2. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  3. Yan F,Di S,Takahashi R
    CACTA-superfamily transposable element is inserted in MYB transcription factor gene of soybean line producing variegated seeds.
    Genome, 2015. 58(8): p. 365-74
    [PMID:26360633]
  4. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]