PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G231600.1.p
Common NameGLYMA_09G231600, LOC100815314
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 22990.8 Da    PI: 9.2687
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G231600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.13e-25958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
  Glyma.09G231600.1.p  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58
                         79*********************************************965 PP
2K-box501.3e-17931741899
                K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                          ++e + Lk+ei++Lq+ +  l   + +++ + eLq Le++Le+ + +iRs K++++l++i+ l+ ke  l+ +nk+L+ k+ 
  Glyma.09G231600.1.p  93 KEETNALKQEIQTLQKGISYLFEGGNKTMAIDELQLLEKNLETWIYHIRSMKMNIMLQEIQALKDKEGTLKAANKYLHDKIV 174
                          7899*****************99999*****************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.801161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-35160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-27174IPR002100Transcription factor, MADS-box
CDDcd002653.72E-39276No hitNo description
PRINTSPR004043.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.24689179IPR002487Transcription factor, K-box
PfamPF014868.5E-1893173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MARGKVQLKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK  60
GTMQGLIERY MKFTRGAQPE AAAPEAHPLL VAKEETNALK QEIQTLQKGI SYLFEGGNKT  120
MAIDELQLLE KNLETWIYHI RSMKMNIMLQ EIQALKDKEG TLKAANKYLH DKIVENTAIS  180
NFAEFATDTS YPLIVQDGGF QLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-16189185MEF2 CHIMERA
6byy_B3e-16189185MEF2 CHIMERA
6byy_C3e-16189185MEF2 CHIMERA
6byy_D3e-16189185MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During embryo development, expressed in a punctate pattern from the globular stage to the torpedo stage. {ECO:0000269|PubMed:11855641}.
UniprotTISSUE SPECIFICITY: Preferentially expressed in roots (PubMed:7549482). In root meristem, expressed in external cells of columella, lateral root cap and atrichoblasts. In mature root, expressed in the central cylinder (PubMed:11855641). Expressed in leaf vasculature, young floral meristems and nectaries (PubMed:18203871). {ECO:0000269|PubMed:11855641, ECO:0000269|PubMed:18203871, ECO:0000269|PubMed:7549482}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G231600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0991420.0BT099142.1 Soybean clone JCVI-FLGm-16J2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533515.11e-150agamous-like MADS-box protein AGL12 isoform X3
RefseqXP_028180250.11e-150agamous-like MADS-box protein AGL12 isoform X2
SwissprotQ388415e-77AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A445J4Z71e-148A0A445J4Z7_GLYSO; Agamous-like MADS-box protein AGL12
TrEMBLI1L5Q41e-148I1L5Q4_SOYBN; Uncharacterized protein
STRINGGLYMA09G36590.11e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.16e-78AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]