PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G223500.2.p
Common NameGLYMA_09G223500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 875aa    MW: 95551.9 Da    PI: 5.3279
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G223500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.1e-15464502341
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          +k+CnCkks+Clk+YC Cfaag++C++ C C++C N+ e
  Glyma.09G223500.2.p 464 CKHCNCKKSRCLKLYCHCFAAGTYCTDPCACQGCLNRPE 502
                          89**********************************876 PP
2TCR48.91.3e-15549587139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCk+s ClkkYCeC++a++ Cs+ C+Ce+CkN 
  Glyma.09G223500.2.p 549 RHKRGCNCKRSMCLKKYCECYQANVGCSSGCRCEGCKNV 587
                          589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.5E-15462503IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.296463589IPR005172CRC domain
PfamPF036382.1E-11465500IPR005172CRC domain
SMARTSM011143.2E-17549590IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.3E-11551586IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 875 aa     Download sequence    Send to blast
MMDSPGPSKN NNGSSSSAST LNNNNNDAAS SESPQESPFL RFVKTLSPIP TKASHTTQGC  60
LRLSSPPLVF KSPRISHRET QLTERPQGTR SLGGVILQSV NEGNMLGEAP GDSRTSNSQQ  120
SLPERFINDT QQVFDSKNDE NTQYYSSPSC IDKYLVDPGD IDQMYSAGQD VEQQSTDPAE  180
ASLSDQIHPK NNILNFDRQD GPGDKVEESL PLSEGFNKFH QENAAYGEEP EEMEVENNDV  240
QWSSQEPAKL ESILAADVFE KRYSHDTLPQ GVKGCEDYNE MVPTSHVTAE NILQDGSKAT  300
LKYHGIRRRC LQFGEAASNA LGSNVKLNAT SNKIIMVKPS ELVTSLCPQR GSGNFPLTGP  360
KPTGIGLHIN RIMNAIPTGQ AATMGVRLSD GSQGMKSTSS IRLQRIENVK RSILSSNVDG  420
RSLVNTRTES HEIDDTGNSE DFNIPSSPCQ KKKKISETAD DDGCKHCNCK KSRCLKLYCH  480
CFAAGTYCTD PCACQGCLNR PEYAETVVET KQLIESRDPS AFDPKIVLPT TDISSHMDDE  540
NLTTPSSARH KRGCNCKRSM CLKKYCECYQ ANVGCSSGCR CEGCKNVYGK KEDYVAFEHT  600
SSKERESSIV EEGSDYTFHK KLERVASKTV YGLHCLSPIT PSLQCSEQGK EAAKSIIISG  660
NYLPSPESDV NMFASCANYT KSSENLHSSQ ALLGTNEMLG STPYDSQIEC SHAALLQLTP  720
PLSNPELCGT SSFSSIANEW RNISQSQPTH GCISQLPSGS LCWRSSPLTP SNRVGEAQYF  780
QCSESDSRLF DILENETPDV LKEASTPMTS VKINSPTQKR VSPPQSRHFE IGSSSSGGLR  840
SDRKFIFESV PSFPSLSPCV NSKSNGDDDE EDIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1746558712121Protein lin-54 homolog
5fd3_B1e-1746558712121Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.84700.0cotyledon| hypocotyl| meristem| seed coat| somatic embryo| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO42181860.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G223500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0101650.0AJ010165.1 Glycine max mRNA for cysteine-rich polycomb-like protein (gpp1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025979628.10.0CRC domain-containing protein TSO1-like isoform X3
TrEMBLK7M6C80.0K7M6C8_SOYBN; Uncharacterized protein
STRINGGLYMA14G14750.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-55Tesmin/TSO1-like CXC domain-containing protein