PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G212500.2.p

Common Name

GLYMA_09G212500

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GRF

Protein Properties

Length: 331aa MW: 36724.1 Da PI: 8.8974

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G212500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	69.1	5.4e-22	61	105	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++ +++k+C+rH+ r r rsrk++e+ Glyma.09G212500.2.p 61 DPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVES 105 79****************************************997 PP
2	QLQ	40.2	1e-14	13	42	8	37
QLQ 8 lqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +++L++Q+l++KyL a++ vPp+Ll++i+k Glyma.09G212500.2.p 13 WHELEHQALIFKYLKAGLSVPPDLLLPIRK 42 9***************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	0.0019	6	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.875	7	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.8E-10	13	41	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.698	61	105	IPR014977	WRC domain
Pfam	PF08879	8.9E-19	62	104	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MSQLLLLLLL SEWHELEHQA LIFKYLKAGL SVPPDLLLPI RKSLQLISSH PSMGYYGKKI 60 DPEPGRCRRT DGKKWRCSRD AHPDSKYCDR HMIRRRYRSR KPVESSQTHS SSSASAASSN 120 SNPVAAGGGG GSVANVSATA AKNLHTLPLH INGAREGFTF TLGNNTSTNT NTNTNTLPHL 180 HMNPLTLSAD NTKKTYRFGL NSEADEHNVL QKDLGSVRYQ GYDFTSDAMW SQMSHIPSNT 240 VSESRIGSTM LGNCFQHQTM RDAELLNLET ARTKDLVFSG QLSSAGGMKQ EYQSPQSLFS 300 DWDWKKDLSS SALEYRPNKD FNCNPDVNVD *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.37516	0.0	leaf\| seed coat

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G212500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-146	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003533459.1	0.0	growth-regulating factor 4
TrEMBL	A0A0R0IBA7	0.0	A0A0R0IBA7_SOYBN; Uncharacterized protein
STRING	GLYMA09G34565.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	9e-36	growth-regulating factor 5

Link Out ? help Back to Top
Phytozome	Glyma.09G212500.2.p