PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G212500.1.p
Common NameGLYMA_09G212500, LOC100777524
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 338aa    MW: 37342.6 Da    PI: 9.1016
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G212500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC69.15.6e-2268112145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCsr++ +++k+C+rH+ r r rsrk++e+
  Glyma.09G212500.1.p  68 DPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVES 112
                          79****************************************997 PP
2QLQ57.73.5e-201449237
                  QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                         +FTaaQ+++L++Q+l++KyL a++ vPp+Ll++i+k
  Glyma.09G212500.1.p 14 PFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRK 49
                         9*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.5E-121349IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.6E-151448IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.6931449IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.69868112IPR014977WRC domain
PfamPF088799.1E-1969111IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSVPPPSTAA MWTPFTAAQW HELEHQALIF KYLKAGLSVP PDLLLPIRKS LQLISSHPSM  60
GYYGKKIDPE PGRCRRTDGK KWRCSRDAHP DSKYCDRHMI RRRYRSRKPV ESSQTHSSSS  120
ASAASSNSNP VAAGGGGGSV ANVSATAAKN LHTLPLHING AREGFTFTLG NNTSTNTNTN  180
TNTLPHLHMN PLTLSADNTK KTYRFGLNSE ADEHNVLQKD LGSVRYQGYD FTSDAMWSQM  240
SHIPSNTVSE SRIGSTMLGN CFQHQTMRDA ELLNLETART KDLVFSGQLS SAGGMKQEYQ  300
SPQSLFSDWD WKKDLSSSAL EYRPNKDFNC NPDVNVD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.375160.0leaf| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G212500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-146AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533459.10.0growth-regulating factor 4
TrEMBLK7LF720.0K7LF72_SOYBN; Uncharacterized protein
STRINGGLYMA09G34565.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149481112
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-38growth-regulating factor 5