PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G206200.1.p
Common NameGLYMA_09G206200, LOC100810159
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 353aa    MW: 39309.3 Da    PI: 7.2501
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G206200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.93.2e-201562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+l+d++ ++G g+W+t +++ g++R++k+c++rw +yl
  Glyma.09G206200.1.p 15 KGPWTPEEDEKLIDYISKHGHGSWRTLPKRAGLNRCGKSCRLRWTNYL 62
                         79********************************************97 PP
2Myb_DNA-binding50.16.5e-1668112147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+++++++ ++++ +  lG++ W++Ia++++ gRt++++k++w+++
  Glyma.09G206200.1.p  68 RGKFSEDDERIIINFHSVLGNK-WSKIAAHLP-GRTDNEIKNYWNTH 112
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-26765IPR009057Homeodomain-like
PROSITE profilePS5129426.5821066IPR017930Myb domain
SuperFamilySSF466891.01E-3112109IPR009057Homeodomain-like
SMARTSM007172.2E-161464IPR001005SANT/Myb domain
PfamPF002493.2E-181562IPR001005SANT/Myb domain
CDDcd001676.82E-131762No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2566117IPR009057Homeodomain-like
SMARTSM007171.9E-1567115IPR001005SANT/Myb domain
PROSITE profilePS5129421.69467117IPR017930Myb domain
PfamPF002491.6E-1468112IPR001005SANT/Myb domain
CDDcd001671.56E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGRSPCCEES SSVKKGPWTP EEDEKLIDYI SKHGHGSWRT LPKRAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEDDERIII NFHSVLGNKW SKIAAHLPGR TDNEIKNYWN THIRKKLLKM  120
GIDPETHKPR TDLNHLMSLS QLLGMSNLSS AISTAWGNKP LGLQPDITQL AKIQLVQNLL  180
QLINNNSFVN IGNNNPYLLS NPNLNPLFLN GINPLQTNKE PHVVLSGSEE YANPGLYSQA  240
QSQCSQHDVS KSLADLDGGS IPQDYNKINS TTTSRENLAE NPPLPALVAF PPKMGTFNQM  300
DSGCNIAAQT STESPSNTIF DDWEKLLDDE TSGSYWKEIL DLTSTSASPI LW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30151177108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.285950.0hypocotyl
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00438DAPTransfer from AT4G17785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G206200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533439.10.0transcription factor MYB41
RefseqXP_028180067.10.0transcription factor MYB41-like
TrEMBLA0A445J3T50.0A0A445J3T5_GLYSO; Transcription factor MYB39 isoform A
TrEMBLI1L4Y60.0I1L4Y6_SOYBN; Uncharacterized protein
STRINGGLYMA09G33870.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-83myb domain protein 9